Figures (3)  Tables (2)

    • Figure 1. 

      Correlation analysis between chromosome size and abundance of the mono-nucleotide and di-nucleotide repeat motifs.

    • Figure 2. 

      Distribution of perfect repeat sequences in the Chinese cabbage genome.

    • Figure 3. 

      Density of SSRs in Chinese cabbage.

    • Chromosome no.Chromosome size (Mb)Repeat typeTotal
      Mono-
      nucleotide      		Di-
      nucleotide      		Tri-
      nucleotide      		Tetra-
      nucleotide      		Penta-
      nucleotide      		Hexa-
      nucleotide
      132.8513,291/404.603,092/94.121,113/33.8885/2.5922/0.6720/0.6117,623/536.47
      229.5113,111/444.292,974/100.781,035/35.0777/2.6118/0.6122/0.7517,237/584.11
      335.3516,379/463.343,424/96.861,484/41.9884/2.3828/0.7920/0.5721,419/605.91
      422.759,743/428.262,330/102.42771/33.8969/3.0313/0.5711/0.4812,937/568.66
      535.0212,994/371.053,083/88.041,106/31.5872/2.0619/0.5424/0.6917,298/493.95
      638.6513,949/360.913,192/82.591,154/29.8691/2.3530/0.7819/0.4918,435/476.97
      728.8612,633/437.732,914/100.971,003/34.7586/2.9814/0.4916/0.5516,666/577.48
      826.8811,388/423.662,549/94.83896/ 33.3365/2.4222/0.8217/0.6314,937/555.69
      952.8920,423/386.144,765/90.091,581/29.89131/2.4847/0.8931/0.5926,978/510.08
      1017.997,725/429.411,827/101.56742/41.2545/2.5012/0.6711/0.6110,362/575.99
      Total320.75131,636/410.4030,150/94.0010,885/33.94805/2.51225/0.70191/0.59173,892/542.14
      The number that before and after “/” represent SSRs abundance and relative abundance

      Table 1. 

      Abundance and relative abundance of SSRs in the genome of Chinese cabbage.

    • Chromosome
      no.      		Mono-
      nucleotide      		Di-nucleotideTri-nucleotide
      1A/T(12977)AC/GT(168)AG/CT(952)AAC/GTT(150)AAG/CTT(313)AAT/ATT(206)ACC/GGT(86)ACG/CGT(22)
      C/G(314)AT/TA(1971)CG/GC(1)ACT/AGT(12)AGC/CTG(36)AGG/CCT(129)ATC/ATG(136)CCG/CGG(23)
      2A/T(12822)AC/GT(155)AG/CT(753)AAC/GTT(98)AAG/CTT(331)AAT/ATT(201)ACC/GGT(56)ACG/CGT(29)
      C/G(289)AT/TA(2064)CG/GC(2)ACT/AGT(18)AGC/CTG(18)AGG/CCT(117)ATC/ATG(147)CCG/CGG(20)
      3A/T(16090)AC/GT(208)AG/CT(1080)AAC/GTT(182)AAG/CTT(469)AAT/ATT(223)ACC/GGT(100)ACG/CGT(24)
      C/G(289)AT/TA(2136)CG/GC(0)ACT/AGT(34)AGC/CTG(46)AGG/CCT(162)ATC/ATG(217)CCG/CGG(27)
      4A/T(9505)AC/GT(127)AG/CT(653)AAC/GTT(89)AAG/CTT(242)AAT/ATT(140)ACC/GGT(68)ACG/CGT(11)
      C/G(238)AT/TA(1550)CG/GC(0)ACT/AGT(7)AGC/CTG(30)AGG/CCT(89)ATC/ATG(80)CCG/CGG(15)
      5A/T(12623)AC/GT(183)AG/CT(1001)AAC/GTT(125)AAG/CTT(314)AAT/ATT(221)ACC/GGT(74)ACG/CGT(11)
      C/G(371)AT/TA(1898)CG/GC(1)ACT/AGT(24)AGC/CTG(37)AGG/CCT(138)ATC/ATG(140)CCG/CGG(22)
      6A/T(13546)AC/GT(167)AG/CT(1033)AAC/GTT(138)AAG/CTT(348)AAT/ATT(235)ACC/GGT(63)ACG/CGT(21)
      C/G(403)AT/TA(1992)CG/GC(0)ACT/AGT(30)AGC/CTG(34)AGG/CCT(113)ATC/ATG(151)CCG/CGG(21)
      7A/T(12388)AC/GT(146)AG/CT(882)AAC/GTT(126)AAG/CTT(345)AAT/ATT(175)ACC/GGT(57)ACG/CGT(5)
      C/G(245)AT/TA(1885)CG/GC(1)ACT/AGT(18)AGC/CTG(36)AGG/CCT(87)ATC/ATG(142)CCG/CGG(12)
      8A/T(11168)AC/GT(119)AG/CT(799)AAC/GTT(90)AAG/CTT(295)AAT/ATT(162)ACC/GGT(74)ACG/CGT(11)
      C/G(220)AT/TA(1630)CG/GC(1)ACT/AGT(16)AGC/CTG(33)AGG/CCT(99)ATC/ATG(107)CCG/CGG(9)
      9A/T(19818)AC/GT(262)AG/CT(1383)AAC/GTT(161)AAG/CTT(505)AAT/ATT(269)ACC/GGT(116)ACG/CGT(26)
      C/G(605)AT/TA(3119)CG/GC(1)ACT/AGT(20)AGC/CTG(59)AGG/CCT(164)ATC/ATG(238)CCG/CGG(23)
      10A/T(7552)AC/GT(106)AG/CT(655)AAC/GTT(95)AAG/CTT(245)AAT/ATT(129)ACC/GGT(45)ACG/CGT(14)
      C/G(173)AT/TA(1066)CG/GC(0)ACT/AGT(19)AGC/CTG(23)AGG/CCT(74)ATC/ATG(87)CCG/CGG(11)

      Table 2. 

      Amounts of different SSR repeat motifs in the genome of Chinese cabbage.