Figures (5)  Tables (1)
    • Figure 1. 

      The workflow of glycoprotein enrichment and identification in poplar developing xylem. (a) Enrichment and recognition of the glycoproteins. Crude proteins were extracted from poplar developing xylem, and the glycoproteins were bound to ConA, PNA, WGA and jacalin lectin affinity columns. The eluted glycoproteins were digested by trypsin and the peptide segments were further recognized through mass spectrum analysis. (b) Validation of the eluted glycoproteins. The glycoproteins separated on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels were stained using Coomassie brilliant blue (CBB) staining and Pierce Glycoprotein Staining kit (detecting sugar moieties of the glycoproteins), respectively.

    • Figure 2. 

      Verification of N- and/or O-glycosylation in PtSOD and HAD proteins. (a), (b) Analysis of PtSOD or PtHAD gene expression by RT-PCR in their transgenic Arabidopsis plants. AtActin2 serves as a control gene. (c), (d) Western blot analysis of PtSOD1-Flag and HAD-Flag protein levels in corresponding transgenic plants usig anti-FLAG antibody. Coomassie brilliant-stained Rubsico large subunit proteins indicate the loading amount of each sample on SDS-PAGE gels as control. (e), (f) Migration analysis of PtSOD and PtHAD proteins on SDS-PAGE gels. Protein extracts with/without the digestion of PNGase F (N) or O-glycosidase (O) were separated on 10% SDS-PAGE gels and followed by immunoblotting with anti-FLAG antibody.

    • Figure 3. 

      Functional classification and localization of the identified glycoproteins. (a) Functional classification of glycoproteins identified from Populus developing xylem. Please refer to Supplemental Table S1 for detailed analysis. (b) Subcellular localization of the identified glycoproteins predicted by Plant-mPLoc, ngLOC, ProtComp9.0, WoLF PSORT and YLOC.

    • Figure 4. 

      Expression profiles of 25 genes encoding the glycoproteins in different poplar tissues using RT-qPCR analysis. Different tissues included phloem (PH), xylem (XY), young leaf (YL) and mature leaf (OL). The expression of PtActin2 was used as an internal control. Data are means ± standard error of three technical replicate results.

    • Figure 5. 

      Identified glycoproteins are proposed to be involved in wood formation that includes cambia cell division, cell differentiation and expansion, SCW synthesis and PCD.

    • Protein nameGi numberPhytozome
      accession no.
      PeptidesScoreCov %N-/O-linked sites
      Proteins acting on polysaccharides (47)
      GH3 Beta-xylosidase222845455Potri.001G206800943216Y/Y
      GH3 Beta-xylosidase222846715Potri.001G089100618810Y/Y
      GH3 Beta-xylosidase222861083Potri.014G122200628511Y/N
      GH3 Beta-xylosidase222844484Potri.002G1972001761Y/N
      GH3 Beta-glucosidase222852772Potri.007G1143001481Y/Y
      GH5 Mannan endo-1,4-beta-mannosidase222855167Potri.006G1099002866Y/Y
      GH16 Xyloglucan endo-transglycosylase118481141Potri.003G159700648326Y/N
      GH16 Xyloglucan endo-transglycosylase124109187Potri.001G071000641428Y/N
      GH16 Xyloglucan endo-transglycosylase222857312Potri.013G00570022039Y/Y
      GH17 Glucan endo-1,3-beta-glucosidase222850378Potri.009G0765003868Y/Y
      GH17 Glucan endo-1,3-beta-glucosidase222858075Potri.013G05970012133339Y/N
      GH17 Glucan endo-1,3-beta-glucosidase222862285Potri.019G03290010113129Y/Y
      GH17 Glucan endo-1,3-beta-glucosidase222873604Potri.018G150400767120Y/Y
      GH 27 Alpha-galactosidase222862356Potri.019G0567001642Y/Y
      GH28 polygalacturonase-like222843096Potri.002G162400544620Y/N
      GH28 polygalacturonase222863392Potri.010G00550031679Y/N
      GH28 polygalacturonase222838571Potri.008G211500316010Y/N
      GH28 polygalacturonase222861707Potri.014G11210021347Y/N
      GH28 polygalacturonase222837934Potri.003G13170011253Y/Y
      GH28 polygalacturonase222860156Potri.011G1590002844Y/N
      GH28 polygalacturonase222843280Potri.002G1869002606Y/N
      GH28 polygalacturonase222867323Potri.016G0512002534Y/Y
      GH31 Glucan 1,3-alpha-glucosidase222853440Potri.007G1000001028713Y/N
      GH31 Glucan 1,3-alpha-glucosidase222856503Potri.005G0690004976Y/Y
      GH32 beta-fructofuranosidase222868827Potri.015G1271002465Y/Y
      GH38 alpha-mannosidase222843486Potri.002G2382001485919Y/N
      GH38 alpha-mannosidase222861848Potri.014G1436001052115Y/N
      GH38 alpha-mannosidase222859443Potri.012G10650053747Y/Y
      GH38 alpha-mannosidase222859442Potri.012G1064001507N/Y
      GH51 Alpha-L-arabinofuranosidase222853916Potri.006G02990022695Y/Y
      GH127 Beta-L-arabinofuranosidase222845043Potri.001G01820051547Y/Y
      Alpha-fucosidase222863630Potri.010G047900315111Y/N
      Xylose isomerase222865922Potri.T0939001399837N/N
      Pectinesterase222861105Potri.014G12700022856Y/Y
      Pectinesterase222844452Potri.002G20260012633Y/Y
      Pectin lyase118488323Potri.003G1759002716Y/Y
      Acetylglucosaminyl transferase222845138Potri.001G0681002487Y/N
      Glycopeptide N-glycosidase222859921Potri.011G109700726811Y/Y
      Glucosidase II beta subunit222872983Potri.006G0616001744Y/N
      Fasciclin-like arabinogalactan protein222861509Potri.014G0717002997Y/Y
      Fasciclin-like arabinogalactan protein47717933Potri.015G12940029610Y/Y
      Fasciclin-like arabinogalactan protein118482997Potri.012G12790028410Y/Y
      Non-classical arabinogalactan protein118482413Potri.002G09310018210N/Y
      Non-classical arabinogalactan protein118481929Potri.004G0447001796Y/Y
      COBRA-like protein118485798Potri.010G001100523212Y/Y
      COBRA-like protein118488472Potri.015G060100414511Y/N
      COBRA-like protein118482010Potri.015G0600001502Y/Y
      Oxido-reductases (43)
      Multicopper oxidase, SKU5-like protein222871142Potri.001G12030013109736Y/Y
      Multicopper oxidase, SKU5-like protein222840952Potri.003G1127001294434Y/Y
      Multicopper oxidase, SKS1-like protein222859558Potri.012G126400523214Y/Y
      Multicopper oxidase, SKS1-like protein222868828Potri.015G12720031678Y/Y
      Multicopper oxidase, SKS4-like protein118487967Potri.004G01010011822Y/N
      Multicopper oxidase222857214Potri.005G24770010103130Y/N
      Multicopper oxidase222842395Potri.002G0137001499727Y/N
      Multicopper oxidase222853065Potri.007G0383001084429Y/Y
      Multicopper oxidase118488761Potri.001G219300952626Y/Y
      Multicopper oxidase222849177Potri.004G1805001247026Y/N
      Multicopper oxidase222843342Potri.002G22760021946Y/Y
      Multicopper oxidase222855045Potri.006G08750041429Y/Y
      Multicopper oxidase222844867Potri.001G00060011092Y/N
      Multicopper oxidase222849246Potri.009G1597004569Y/Y
      Laccase222852007Potri.010G1835006120116Y/Y
      Laccase222852006Potri.008G0737009111323Y/Y
      Laccase222864170Potri.010G1835005100613Y/Y
      Laccase222864171Potri.010G183600563913Y/N
      Laccase222854184Potri.006G0969003957Y/Y
      Laccase222849832Potri.009G0345003797Y/N
      Laccase222850532Potri.009G0425001652Y/Y
      Laccase222846554Potri.001G0546001643Y/N
      Laccase3805960Potri.010G1931001462Y/Y
      peroxidase115345276Potri.003G214700551421Y/N
      Peroxidase118487605Potri.005G19560035512Y/Y
      FAD-Berberine enzyme 545aa222860154Potri.011G158700732315Y/Y
      FAD-Berberine enzyme222846288Potri.001G462800529810Y/N
      FAD-Berberine enzyme222833370Potri.006G12890032235Y/N
      FAD-Berberine enzyme222872123Potri.011G15960021753Y/N
      FAD-Berberine enzyme222846286Potri.001G46260021752Y/Y
      FAD-Berberine enzyme222858409Potri.012G03470021753Y/N
      FAD-Berberine enzyme222834675Potri.011G16030021735Y/N
      FAD-Berberine enzyme222872175Potri.011G1615002894Y/N
      FAD-Berberine enzyme222846302Potri.001G4647001832Y/Y
      FAD-Berberine enzyme222872118Potri.011G1614001802Y/N
      FAD-Berberine enzyme222847838Potri.001G4701001802N/Y
      FAD-Berberine enzyme222860155Potri.011G1588001802Y/Y
      Protein disulfide isomerase222842706Potri.002G08210023311650Y/Y
      Protein disulfide isomerase118485031Potri.009G0136001464829Y/N
      Protein disulfide isomerase222846968Potri.001G1835002555Y/Y
      Chitinase-like118481023Potri.010G1416002659Y/Y
      Cytochrome P450222868639Potri.015G085800156N/Y
      Cu/Zn superoxide dismutase4102861Potri.005G04440016310Y/Y
      Proteases (26)
      Aspartyl protease118482048Potri.001G028200524415Y/Y
      Aspartyl protease 439aa222847473Potri.001G3062001903Y/N
      Serine carboxypeptidase222849960Potri.009G00310021297Y/N
      Serine carboxypeptidase222850469Potri.009G0559004888Y/Y
      Serine carboxypeptidase S28222854432Potri.006G207900349910Y/Y
      Serine carboxypeptidase S28222836225Potri.007G015400642814Y/N
      Serine carboxypeptidase S28118487876Potri.007G015300541813Y/N
      Serine carboxypeptidase S28222853228Potri.007G008100422412Y/N
      Subtilase family protein222860749Potri.011G15540042697Y/N
      Subtilase family protein222875305Potri.001G44030052439Y/N
      Subtilase family protein222848475Potri.004G1739001811Y/Y
      Subtilase family protein222854095Potri.006G0762003765Y/Y
      Peptidase M20/M25/M40222863686Potri.010G07610011131533Y/N
      Peptidase M20/M25/M40118486005Potri.009G1693001291241N/Y
      Peptidase M20/M25/M40222837797Potri.004G208100452612N/Y
      Peptidase M20/M25/M40222842722Potri.002G085400520516Y/Y
      Peptidase M20/M25/M40222840651Potri.003G04520021315Y/N
      Peptidase M28 family222855209Potri.006G153300417810Y/N
      Cysteine proteinase222856445Potri.005G256000432016Y/N
      Cysteine proteinase222843627Potri.002G005700422321Y/N
      Cysteine proteinase222837653Potri.004G207600321212Y/N
      Cysteine proteinase118482340Potri.006G1417001593Y/N
      Proteinase inhibitor118485178Potri.013G11280035639N/Y
      Proteinase inhibitor118482991Potri.019G08330025120N/Y
      Amidohydrolase family222849678Potri.009G067700512212Y/Y
      Amidohydrolase family222847228Potri.001G27340045911Y/Y
      Protein kinase (8)
      LRR protein kinase222868332Potri.016G14410044807Y/Y
      LRR protein kinase222853199Potri.007G01470032314Y/Y
      LRR protein kinase222863806Potri.010G10300041337Y/Y
      LRR protein kinase222854082Potri.006G07390041106Y/Y
      LRR protein kinase222866571Potri.018G1074002982Y/Y
      LRR protein kinase222852307Potri.008G1405001451Y/Y
      LRR protein kinase222856570Potri.005G0830003453Y/Y
      LRR protein kinase222852450Potri.008G1769001472Y/N
      Proteins with interacting/binding domains (9)
      Leucine-rich repeat protein190897432Potri.009G064300966342Y/N
      Leucine-rich repeat protein222853264Potri.007G001000534812Y/N
      Leucine-rich repeat protein222854117Potri.018G15100021324Y/Y
      Leucine-rich repeat protein222846498Potri.001G0175001462Y/N
      HSP70 family protein222867185Potri.016G0198001399824Y/N
      HSP70 family protein222854802Potri.006G0221001493920Y/Y
      HSP70 family protein222841104Potri.003G1436001622N/Y
      Calreticulin family protein222871704Potri.005G0151001183434Y/Y
      Calreticulin family protein118485765Potri.013G0095001065338Y/Y
      Proteins related to lipid metabolism(6)
      Lipase/lipooxygenase118483838Potri.005G076900528740Y/N
      Purple acid phosphatase222865126Potri.010G15840031197Y/N
      Purple acid phosphatase222851161Potri.008G09600031096Y/N
      HAD superfamily protein222839124Potri.004G2329002639Y/N
      Type I phosphodiesterase222855200Potri.006G15090021607Y/Y
      Type I phosphodiesterase222872448Potri.018G0666001793Y/Y
      Amino acid metabolism (4)
      Amidase family protein222869309Potri.015G109400418012Y/Y
      Methionine synthase222850043Potri.009G1528002564Y/Y
      Methionine synthase118483919Potri.013G0618002564Y/Y
      Cysteine desulfurase222850426Potri.009G066000155Y/Y
      Miscellaneous proteins (6)
      Germin-like protein 10118482567Potri.002G184900462319Y/Y
      Cyclase family protein222850275Potri.009G097300219213Y/N
      Cyclase family protein118488222Potri.001G30160049518Y/Y
      Kelch repeat protein222845394Potri.001G178500173Y/N
      Nucleosome assembly protein222854259Potri.006G1486001563Y/N
      Cupin domain protein222858047Potri.013G0516001557Y/N
      Unknown function (5)
      Unknown protein (Duf642)118486479Potri.011G087500412416Y/Y
      Unknown protein (Duf568)118487890Potri.002G2492001545Y/Y
      Unknown protein (Duf2828)222850304Potri.009G091400157Y/Y
      Unknown protein222846617Potri.001G0688001806Y/Y
      Unknown protein118486279Potri.019G0769002685Y/Y

      Table 1. 

      Identification of the proteins enriched by lectin affinity from poplar developing xylem.