Figures (7)  Tables (2)
    • Figure 1. 

      Phylogenetic analysis of the identified AQPs from pea genome. (a) The pea AQPs proteins aligned with those from the cool-season legume Medicago truncatual. (b) The four un-assigned pea AQPs in (a) (denoted as NA) were further aligned with the AQPs of rice, soybean, and Arabidopsis by using the Clustal W program implemented in MEGA 7 software. The nomenclature of PsAQPs was based on homology with the identified aquaporins that were clustered together.

    • Figure 2. 

      Chromosomal localization of the 41 PsAQPs on the seven chromosomes of pea. Chr1-7 represents the chromosomes 1 to 7. The numbers on the right of each chromosome show the physical map positions of the AQP genes (Mbp). Blue, green, orange, brown, and black colors represent TIPs, NIPs, PIPs, SIPs, and XIP, respectively.

    • Figure 3. 

      The exon-intron structures of the AQP genes in pea. Upstream/downstream region, exon, and intron are represented by a blue box, yellow box, and grey line, respectively.

    • Figure 4. 

      Heatmap analysis of the expression of pea AQP gene expressions in different tissues using RNA-seq data (PRJNA267198). Normalized expression of aquaporins in terms of reads per kilobase of transcript per million mapped reads (RPKM) showing higher levels of PIPs, NIPs, TIPs SIPs, and XIP expression across the different tissues analyzed. (Stage A represents 7-8 nodes; stage B represents the start of flowering; stage D represents germination, 5 d after imbibition; stage E represents 12 d after pollination; stage F represents 8 d after sowing; stage G represents 18 d after sowing, LN: Low-nitrate; HN: High-nitrate.

    • Figure 5. 

      The visual phenotype and radicle length of pea seeds treated with water (W), 0.3 M mannitol (M), and fullerol of different concentrations dissolved in 0.3 M mannitol (MF). MF1, MF2, MF3, and MF4 indicated fullerol dissolved in 0.3 M mannitol at the concentration of 10, 50, 100, and 500 mg/L, respectively. (a) One hundred and fifty grains of pea seeds each were used for phenotype analysis at 72 h after treatment. Radicle lengths were measured using a ruler in three replicates R1, R2, and R3 in all the treatments. (b) Multiple comparison results determined using the SSR-Test method were shown with lowercase letters to indicate statistical significance (P < 0.05).

    • Figure 6. 

      Venn diagram showing the shared and unique differentially expressed PsAQP genes in imbibing seeds under control (W), Mannitol (M) and Mannitol + Fullerol (MF3) treatments. Up-regulation (UG): PsPIP2-5, PsNIP1-1, PsNIP2-1-2, PsNIP4-2, PsNIP6-3, PsNIP1-5, PsTIP2-2, PsTIP4-1, PsSIP1-3, PsXIP2-1; Down-regulation (DG): PsTIP2-3, PsTIP3-2, PsNIP1-7, PsNIP5-1, PsXIP2-1.

    • Figure 7. 

      The expression patterns of seven PsAQPs in imbibing seeds as revealed by RNA-Seq and qRT-PCR. The seeds were sampled after 12 h soaking in three different solutions, namely water (W), 0.3 M mannitol (M), and 100 mg/L fullerol dissolved in 0.3 M mannitol (MF3) solution. Error bars are standard errors calculated from three replicates.

    • Chromosome
      S. NoGene NameGene IDGene length
      (bp)
      LocationStartEndTranscription length (bp)CDS length
      (bp)
      Protein length
      (aa)
      1PsPIP1-1Psat5g128840.32507chr5LG3231,127,859231,130,365675675225
      2PsPIP1-2Psat2g034560.11963chr2LG149,355,95849,357,920870870290
      3PsPIP1-4Psat2g182480.11211chr2LG1421,647,518421,648,728864864288
      4PsPIP2-1Psat6g183960.13314chr6LG2369,699,084369,702,397864864288
      5PsPIP2-2-1Psat4g051960.11223chr4LG486,037,44686,038,668585585195
      6PsPIP2-2-2Psat5g279360.22556chr5LG3543,477,849543,480,4042555789263
      7PsPIP2-3Psat7g228600.22331chr7LG7458,647,213458,649,5432330672224
      8PsPIP2-4Psat3g045080.11786chr3LG5100,017,377100,019,162864864288
      9PsPIP2-5Psat0s3550g0040.11709scaffold0355020,92922,63711911191397
      10PsTIP1-1Psat3g040640.12021chr3LG589,426,47389,428,493753753251
      11PsTIP1-3Psat3g184440.12003chr3LG5393,920,756393,922,758759759253
      12PsTIP1-4Psat7g219600.12083chr7LG7441,691,937441,694,019759759253
      13PsTIP1-7Psat6g236600.11880chr6LG2471,659,417471,661,296762762254
      14PsTIP2-1Psat1g005320.11598chr1LG67,864,8107,866,407750750250
      15PsTIP2-2Psat4g198360.11868chr4LG4407,970,525407,972,392750750250
      16PsTIP2-3Psat1g118120.12665chr1LG6230,725,833230,728,497768768256
      17PsTIP2-6Psat2g177040.11658chr2LG1416,640,482416,642,139750750250
      18PsTIP3-2Psat6g054400.11332chr6LG254,878,00354,879,334780780260
      19PsTIP4-1Psat6g037720.21689chr6LG230,753,62430,755,3121688624208
      20PsTIP5-1Psat7g157600.11695chr7LG7299,716,873299,718,567762762254
      21PsNIP1-1Psat1g195040.21864chr1LG6346,593,853346,595,7161863645215
      22PsNIP1-3Psat1g195800.11200chr1LG6347,120,121347,121,335819819273
      23PsNIP1-5Psat7g067480.12365chr7LG7109,420,633109,422,997828828276
      24PsNIP1-6Psat7g067360.12250chr7LG7109,270,462109,272,711813813271
      25PsNIP1-7Psat1g193240.11452chr1LG6344,622,606344,624,057831831277
      26PsNIP2-1-2Psat3g197520.1669chr3LG5420,092,382420,093,050345345115
      27PsNIP2-2-2Psat3g197560.1716chr3LG5420,103,168420,103,883486486162
      28PsNIP3-1Psat2g072000.11414chr2LG1133,902,470133,903,883798798266
      29PsNIP4-1Psat7g126440.11849chr7LG7209,087,362209,089,210828828276
      30PsNIP4-2Psat5g230920.11436chr5LG3463,340,575463,342,010825825275
      31PsNIP5-1Psat6g190560.11563chr6LG2383,057,323383,058,885867867289
      32PsNIP6-1Psat5g304760.45093chr5LG3573,714,868573,719,9605092486162
      33PsNIP6-2Psat7g036680.12186chr7LG761,445,34161,447,134762762254
      34PsNIP6-3Psat7g259640.12339chr7LG7488,047,315488,049,653918918306
      35PsNIP7-1Psat6g134160.24050chr6LG2260,615,019260,619,06840491509503
      36PsSIP1-1Psat3g091120.13513chr3LG5187,012,329187,015,841738738246
      37PsSIP1-2Psat1g096840.13609chr1LG6167,126,599167,130,207744744248
      38PsSIP1-3Psat7g203280.12069chr7LG7401,302,247401,304,315720720240
      39PsSIP2-1-1Psat0s2987g0040.1706scaffold02987177,538178,243621621207
      40PsSIP2-1-2Psat3g082760.13135chr3LG5173,720,100173,723,234720720240
      41PsXIP2-1Psat7g178080.12077chr7LG7335,167,251335,169,327942942314
      bp: base pair, aa: amino acid.

      Table 1. 

      Description and distribution of aquaporin genes identified in the garden pea genome.

    • S. NoAQPsGeneLengthTMHNPANPAar/R selectivity filterpIWoLF PSORTPlant-mPLoc
      LBLEH2H5LE1LE2
      Plasma membrane intrinsic proteins (PIPs)
      1PsPIP1-1Psat5g128840.32254NPA0F0008.11PlasPlas
      2PsPIP1-2Psat2g034560.12902NPANPAFHTR9.31PlasPlas
      3PsPIP1-4Psat2g182480.12886NPANPAFHTR9.29PlasPlas
      4PsPIP2-1Psat6g183960.12886NPANPAFHT08.74PlasPlas
      5PsPIP2-2-1Psat4g051960.1195300FHTR8.88PlasPlas
      6PsPIP2-2-2Psat5g279360.22635NPANPAFHTR5.71PlasPlas
      7PsPIP2-3Psat7g228600.22244NPA0FF006.92PlasPlas
      8PsPIP2-4Psat3g045080.12886NPANPAFHTR8.29PlasPlas
      Tonoplast intrinsic proteins (TIPs)
      1PsTIP1-1Psat3g040640.12517NPANPAHIAV6.34PlasVacu
      2PsTIP1-3Psat3g184440.12536NPANPAHIAV5.02Plas/VacuVacu
      3PsTIP1-4Psat7g219600.12537NPANPAHIAV4.72VacuVacu
      4PsTIP1-7Psat6g236600.12546NPANPAHIAV5.48Plas/VacuVacu
      5PsTIP2-1Psat1g005320.12506NPANPAHIGR8.08VacuVacu
      6PsTIP2-2Psat4g198360.12506NPANPAHIGR5.94Plas/VacuVacu
      7PsTIP2-3Psat1g118120.12566NPANPAHIAL6.86Plas/VacuVacu
      8PsTIP2-6Psat2g177040.12506NPANPAHIGR4.93VacuVacu
      9PsTIP3-2Psat6g054400.12606NPANPAHIAR7.27Plas/VacuVacu
      10PsTIP4-1Psat6g037720.22086NPANPAHIAR6.29Vac/ plasVacu
      11PsTIP5-1Psat7g157600.12547NPANPANVGC8.2Vacu /plasVacu/Plas
      Nodulin-26 like intrisic proteins (NIPs)
      1PsNIP1-1Psat1g195040.22155NPA0WVF06.71PlasPlas
      2PsNIP1-3Psat1g195800.12735NPANPVWVAR6.77PlasPlas
      3PsNIP1-5Psat7g067480.12766NPANPVWVAN8.98PlasPlas
      4PsNIP1-6Psat7g067360.12716NPANPAWVAR8.65Plas/VacuPlas
      5PsNIP1-7Psat1g193240.12776NPANPAWIAR6.5Plas/VacuPlas
      6PsNIP2-1-2Psat3g197520.11152NPAOG0009.64PlasPlas
      7PsNIP2-2-2Psat3g197560.116230NPA0SGR6.51PlasPlas
      8PsNIP3-1Psat2g072000.12665NPANPASIAR8.59Plas/VacuPlas
      9PsNIP4-1Psat7g126440.12766NPANPAWVAR6.67PlasPlas
      10PsNIP4-2Psat5g230920.12756NPANPAWLAR7.01PlasPlas
      11PsNIP5-1Psat6g190560.12895NPSNPVAIGR7.1PlasPlas
      12PsNIP6-1Psat5g304760.41622NPA0I0009.03PlasPlas
      13PsNIP6-2Psat7g036680.1254000G0005.27ChloPlas/Nucl
      14PsNIP6-3Psat7g259640.13066NPANPVTIGR8.32PlasPlas
      15PsNIP7-1Psat6g134160.25030NLK0WGQR8.5VacuChlo/Nucl
      Small basic intrinsic proteins (SIPs)
      1PsSIP1-1Psat3g091120.12466NPTNPAVLPN9.54PlasPlas/Vacu
      2PsSIP1-2Psat1g096840.12485NTPNPAIVPL9.24VacuPlas/Vacu
      3PsSIP1-3Psat7g203280.12406NPSNPANLPN10.32ChloPlas
      4PsSIP2-1-2Psat3g082760.12404NPLNPAYLGS10.28PlasPlas
      Uncharacterized X intrinsic proteins (XIPs)
      1PsXIP2-1Psat7g178080.13146SPVNPAVVRM7.89PlasPlas
      Length: protein length (aa); pI: Isoelectric point; Trans-membrane helicase (TMH) represents for the numbers of Trans-membrane helices predicted by TMHMM Server v.2.0 tool; WoLF PSORT and Plant-mPLoc: best possible cellualr localization predicted by the WoLF PSORT and Plant-mPLoc tool, respectively (Chlo Chloroplast, Plas Plasma membrane, Vacu Vacuolar membrane, Nucl Nucleus); LB: Loop B, L: Loop E; NPA: Asparagine-Proline-Alanine; H2 represents for Helix 2, H5 represents for Helix 5, LE1 represents for Loop E1, LE2 represents for Loop E2, Ar/R represents for Aromatic/Arginine.

      Table 2. 

      Protein information, conserved amino acid residues, trans-membrane domains, selectivity filter, and predicted subcellular localization of the 39 full-length pea aquaporins.