doi:10.48130/seedbio-2023-0023

[1]

Zhao J, Zhang Y, Zhang Y, Hu Y, Ying Y, et al. 2022. Variation in starch physicochemical properties of rice with different genic allele combinations in two environments. Journal of Cereal Science 108:103575

doi: 10.1016/j.jcs.2022.103575

[2]

Chen K, Ye C, Guo J, Chen D, Guo T, et al. 2023. Agrobacterium-mediated transformation efficiency and grain phenotypes in six indica and japonica rice cultivars. Seed Biology 2:4

doi: 10.48130/seedbio-2023-0004

[3]

Jagadish SVK, Murty MVR, Quick WP. 2015. Rice responses to rising temperatures – challenges, perspectives and future directions. Plant, Cell & Environment 38:1686−98

doi: 10.1111/pce.12430

[4]

Piveta LB, Roma-Burgos N, Noldin JA, Viana VE, Oliveira Cd, et al. 2021. Molecular and physiological responses of rice and weedy rice to heat and drought stress. Agriculture 11:9

doi: 10.3390/agriculture11010009

[5]

Duan H, Tong H, Zhu A, Zhang H, Liu L. 2020. Effects of heat, drought and their combined effects on morphological structure and physicochemical properties of rice (Oryza sativa L.) starch. Journal of Cereal Science 95:103059

doi: 10.1016/j.jcs.2020.103059

[6]

Krishnan P, Ramakrishnan B, Reddy KR, Reddy VR. 2011. High-temperature effects on rice growth, yield, and grain quality. Advances in Agronomy 111:87−206

doi: 10.1016/b978-0-12-387689-8.00004-7

[7]

Pan YH, Chen L, Zhu XY, Li JC, Rashid MAR, et al. 2023. Utilization of natural alleles for heat adaptability QTLs at the flowering stage in rice. BMC Plant Biology 23:256

doi: 10.1186/s12870-023-04260-5

[8]

Liao JL, Zhou HW, Peng Q, Zhong PA, Zhang HY, et al. 2015. Transcriptome changes in rice (Oryza sativa L.) in response to high night temperature stress at the early milky stage. BMC Genomics 16:18

doi: 10.1186/s12864-015-1222-0

[9]

Zhang HY, Lei G, Zhou HW, He C, Liao JL, et al. 2017. Quantitative iTRAQ-based proteomic analysis of rice grains to assess high night temperature stress. Proteomics 17:1600365

doi: 10.1002/pmic.201600365

[10]

Liao J, Zhou H, Zhang H, Zhong P, Huang Y. 2014. Comparative proteomic analysis of differentially expressed proteins in the early milky stage of rice grains during high temperature stress. Journal of Experimental Botany 65:655−71

doi: 10.1093/jxb/ert435

[11]

Pang Y, Hu Y, Bao J. 2021. Comparative phosphoproteomic analysis reveals the response of starch metabolism to high-temperature stress in rice endosperm. International Journal of Molecular Sciences 22:10546

doi: 10.3390/ijms221910546

[12]

Silmon de Monerri NC, Yakubu RR, Chen AL, Bradley PJ, Nieves E, et al. 2015. The ubiquitin proteome of Toxoplasma gondii reveals roles for protein ubiquitination in cell-cycle transitions. Cell Host and Microbe 18:621−33

doi: 10.1016/j.chom.2015.10.014

[13]

Liu CW, Hsu YK, Cheng YH, Yen HC, Wu YP, et al. 2012. Proteomic analysis of salt-responsive ubiquitin-related proteins in rice roots. Rapid Communications in Mass Spectrometry 26:1649−60

doi: 10.1002/rcm.6271

[14]

Xie X, Kang H, Liu W, Wang GL. 2015. Comprehensive profiling of the rice ubiquitome reveals the significance of lysine ubiquitination in young leaves. Journal of Proteome Research 14:2017−25

doi: 10.1021/pr5009724

[15]

Chen XL, Xie X, Wu L, Liu C, Zeng L, et al. 2018. Proteomic analysis of ubiquitinated proteins in rice (Oryza sativa L.) after treatment with pathogen-associated molecular pattern (PAMP) elicitors. Frontiers in Plant Science 9:1064

doi: 10.3389/fpls.2018.01064

[16]

Liu J, Zhang C, Wei C, Liu X, Wang M, et al. 2016. The RING finger ubiquitin E3 ligase OsHTAS enhances heat tolerance by promoting H₂O₂-induced stomatal closure in rice. Plant Physiology 170:429−43

doi: 10.1104/pp.15.00879

[17]

Serrano I, Campos L, Rivas S. 2018. Roles of E3 ubiquitin-ligases in nuclear protein homeostasis during plant stress responses. Frontiers in Plant Science 9:139

doi: 10.3389/fpls.2018.00139

[18]

Nguyen T, Shen S, Cheng M, Chen Q. 2022. Identification of QTLs for heat tolerance at the flowering stage using chromosome segment substitution lines in rice. Genes 13:2248

doi: 10.3390/genes13122248

[19]

Wei H, Liu J, Wang Y, Huang N, Zhang X, et al. 2013. A dominant major locus in chromosome 9 of rice (Oryza sativa L. ) confers tolerance to 48 °C high temperature at seedling stage. Journal of Heredity 104:287−94

doi: 10.1093/jhered/ess103

[20]

Crofts N, Abe N, Oitome NF, Matsushima R, Hayashi M, et al. 2015. Amylopectin biosynthetic enzymes from developing rice seed form enzymatically active protein complexes. Journal of Experimental Botany 66:4469−82

doi: 10.1093/jxb/erv212

[21]

Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, et al. 2011. Systematic and quantitative assessment of the ubiquitin-modified proteome. Molecular Cell 44:325−40

doi: 10.1016/j.molcel.2011.08.025

[22]

Zhang N, Zhang L, Shi C, Tian Q, Lv G, et al. 2017. Comprehensive profiling of lysine ubiquitome reveals diverse functions of lysine ubiquitination in common wheat. Scientific Reports 7:13601

doi: 10.1038/s41598-017-13992-y

[23]

Guo J, Liu J, Wei Q, Wang R, Yang W, et al. 2017. Proteomes and ubiquitylomes analysis reveals the involvement of ubiquitination in protein degradation in petunias. Plant Physiology 173:668−87

doi: 10.1104/pp.16.00795

[24]

Eisenhardt BD. 2013. Small heat shock proteins: recent developments. Biomolecular Concepts 4:583−95

doi: 10.1515/bmc-2013-0028

[25]

Mu C, Zhang S, Yu G, Chen N, Li X, et al. 2013. Overexpression of small heat shock protein LimHSP16.45 in Arabidopsis enhances tolerance to abiotic stresses. Public Library of Science 8:e82264

doi: 10.1371/journal.pone.0082264

[26]

Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, et al. 2000. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290:2105−10

doi: 10.1126/science.290.5499.2105

[27]

Tetlow IJ, Emes MJ. 2017. Starch biosynthesis in the developing endosperms of grasses and cereals. Agronomy 7:81

doi: 10.3390/agronomy7040081

[28]

Chen R, Zhao X, Shao Z, Wei Z, Wang Y, et al. 2007. Rice UDP-glucose pyrophosphorylase1 is essential for pollen callose deposition and its cosuppression results in a new type of thermosensitive genic male sterility. The Plant Cell 19:847−61

doi: 10.1105/tpc.106.044123

[29]

Nakamura Y. 2018. Rice starch biotechnology: Rice endosperm as a model of cereal endosperms. Starch 70:1600375

doi: 10.1002/star.201600375

[30]

Lou G, Bhat MA, Tan X, Wang Y, He Y. 2023. Research progress on the relationship between rice protein content and cooking and eating quality and its influencing factors. Seed Biology 2:16

doi: 10.48130/SeedBio-2023-0016

[31]

Bligh HFJ, Larkin PD, Roach PS, Jones CA, Fu H, et al. 1998. Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties. Plant Molecular Biology 38:407−15

doi: 10.1023/A:1006021807799

[32]

Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, et al. 2018. SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Research 46:296−303

doi: 10.1093/nar/gky427

[33]

Studer G, Rempfer C, Waterhouse AM, Gumienny R, Haas J, et al. 2020. QMEANDisCo—distance constraints applied on model quality estimation. Bioinformatics 36:1765−71

doi: 10.1093/bioinformatics/btz828

[34]

Nakamura Y. 2002. Towards a better understanding of the metabolic system for amylopectin biosynthesis in plants: rice endosperm as a model tissue. Plant and Cell Physiology 43:718−25

doi: 10.1093/pcp/pcf091

[35]

Nakamura Y, Umemoto T, Ogata N, Kuboki Y, Yano M, et al. 1996. Starch debranching enzyme (R-enzyme or pullulanase) from developing rice endosperm: purification, cDNA and chromosomal localization of the gene. Planta 199:209−18

doi: 10.1007/BF00196561

[36]

Jeon JS, Ryoo N, Hahn TR, Walia H, Nakamura Y. 2010. Starch biosynthesis in cereal endosperm. Plant Physiology and Biochemistry 48:383−92

doi: 10.1016/j.plaphy.2010.03.006

[37]

Crofts N, Nakamura Y, Fujita N. 2017. Critical and speculative review of the roles of multi-protein complexes in starch biosynthesis in cereals. Plant Science 262:1−8

doi: 10.1016/j.plantsci.2017.05.007

[38]

Satoh H, Shibahara K, Tokunaga T, Nishi A, Tasaki M, et al. 2008. Mutation of the plastidial α-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm. The Plant Cell 20:1833−49

doi: 10.1105/tpc.107.054007

[39]

Byrne ME. 2009. A role for the ribosome in development. Trends in Plant Science 14:512−19

doi: 10.1016/j.tplants.2009.06.009