[1]

Meng F, Tang Q, Chu T, Li X, Lin Y, et al. 2022. TCMPG: an integrative database for traditional Chinese medicine plant genomes. Horticulture Research 9:uhac060

doi: 10.1093/hr/uhac060
[2]

He S, Yang L, Ye S, Lin Y, Li X, et al. 2022. MPOD: Applications of integrated multi-omics database for medicinal plants. Plant Biotechnology Journal 20:797−99

doi: 10.1111/pbi.13769
[3]

Su X, Yang L, Wang D, Shu Z, Yang Y, et al. 2022. 1 K Medicinal Plant Genome Database: an integrated database combining genomes and metabolites of medicinal plants. Horticulture Research 9:uhac075

doi: 10.1093/hr/uhac075
[4]

Members C-N, Partners. 2021. Database resources of the national genomics data center, china national center for bioinformation in 2021. Nucleic Acids Research 49:D18−D28

doi: 10.1093/nar/gkaa1022
[5]

Liao B, Shen X, Xiang L, Guo S, Chen S, et al. 2022. Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield. Molecular Plant 15:1310−28

doi: 10.1016/j.molp.2022.05.013
[6]

Meng F, Chu T, Feng P, Li N, Song C, et al. 2023. Genome assembly of Polygala tenuifolia provides insights into its karyotype evolution and triterpenoid saponin biosynthesis. Horticulture Research 10:uhad139

doi: 10.1093/hr/uhad139
[7]

Wang YS, Chen C, Zhang SY, Li Y, Jin YH. 2021. (20S) Ginsenoside Rh2 Inhibits STAT3/VEGF Signaling by Targeting Annexin A2. International Journal of Molecular Sciences 22:9289

doi: 10.3390/ijms22179289
[8]

Xu H, Chen J, Chen P, Li W, Shao J, et al. 2023. Costunolide covalently targets NACHT domain of NLRP3 to inhibit inflammasome activation and alleviate NLRP3-driven inflammatory diseases. Acta Pharmaceutica Sinica B 13:678−93

doi: 10.1016/j.apsb.2022.09.014
[9]

Xue R, Fang Z, Zhang M, Yi Z, Wen C, et al. 2013. TCMID: Traditional Chinese Medicine integrative database for herb molecular mechanism analysis. Nucleic Acids Research 41:D1089−D1095

doi: 10.1093/nar/gks1100
[10]

Huang L, Xie D, Yu Y, Liu H, Shi Y, et al. 2018. TCMID 2.0: a comprehensive resource for TCM. Nucleic Acids Research 46:D1117−D1120

doi: 10.1093/nar/gkx1028
[11]

Ru J, Li P, Wang J, Zhou W, Li B, et al. 2014. TCMSP: a database of systems pharmacology for drug discovery from herbal medicines. Journal of Cheminformatics 6:13

doi: 10.1186/1758-2946-6-13
[12]

Fang S, Dong L, Liu L, Guo J, Zhao L, et al. 2021. HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine. Nucleic Acids Research 49:D1197−D1206

doi: 10.1093/nar/gkaa1063
[13]

Tian S, Zhang J, Yuan S, Wang Q, Lv C, et al. 2023. Exploring pharmacological active ingredients of traditional Chinese medicine by pharmacotranscriptomic map in ITCM. Briefings in Bioinformatics 24:bbad027

doi: 10.1093/bib/bbad027
[14]

Ren L, Xu Y, Ning L, Pan X, Li Y, et al. 2022. TCM2COVID: A resource of anti-COVID-19 traditional Chinese medicine with effects and mechanisms. iMeta 1:e42

doi: 10.1002/imt2.42
[15]

Liu Z, Cai C, Du J, Liu B, Cui L, et al. 2020. TCMIO: A comprehensive database of traditional Chinese medicine on immuno-oncology. Frontiers in Pharmacology 11:439

doi: 10.3389/fphar.2020.00439
[16]

Zhang LX, Dong J, Wei H, Shi SH, Lu AP, et al. 2022. TCMSID: a simplified integrated database for drug discovery from traditional chinese medicine. Journal of Cheminformatics 14:89

doi: 10.1186/s13321-022-00670-z
[17]

Kim SK, Nam S, Jang H, Kim A, Lee JJ. 2015. TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine. BMC Complementary and Alternative Medicine 15:218

doi: 10.1186/s12906-015-0758-5
[18]

Yan D, Zheng G, Wang C, Chen Z, Mao T, et al. 2022. HIT 2.0: an enhanced platform for Herbal Ingredients' Targets. Nucleic Acids Research 50:D1238−D1243

doi: 10.1093/nar/gkab1011
[19]

Yang P, Lang J, Li H, Lu J, Lin H, et al. 2022. TCM-Suite: A comprehensive and holistic platform for Traditional Chinese Medicine component identification and network pharmacology analysis. iMeta 1:e47

doi: 10.1002/imt2.47
[20]

Zhang Y, Li X, Shi Y, Chen T, Xu Z, et al. 2023. ETCM v2.0: An update with comprehensive resource and rich annotations for traditional Chinese medicine. Acta Pharmaceutica Sinica B 13:2559−71

doi: 10.1016/j.apsb.2023.03.012
[21]

Probst D, Reymond JL. 2018. SmilesDrawer: Parsing and drawing SMILES-encoded molecular structures using client-side JavaScript. Journal of Chemical Information and Modeling 58:1−7

doi: 10.1021/acs.jcim.7b00425
[22]

Xiong G, Wu Z, Yi J, Fu L, Yang Z, et al. 2021. ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties. Nucleic Acids Research 49:W5−W14

doi: 10.1093/nar/gkab255
[23]

Ding W, Goldberg D, Zhou W. 2023. PyComplexHeatmap: A Python package to visualize multimodal genomics data. iMeta 2:e115

doi: 10.1002/imt2.115
[24]

Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, et al. 2012. Primer3-new capabilities and interfaces. Nucleic Acids Research 40:e115

doi: 10.1093/nar/gks596
[25]

Koressaar T, Remm M. 2007. Enhancements and modifications of primer design program Primer3. Bioinformatics 23:1289−91

doi: 10.1093/bioinformatics/btm091
[26]

Kautsar SA, Suarez Duran HG, Blin K, Osbourn A, Medema MH. 2017. plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters. Nucleic Acids Research 45:W55−W63

doi: 10.1093/nar/gkx305
[27]

Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, et al. 2018. CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins. Nucleic Acids Research 46:W246−W251

doi: 10.1093/nar/gky425
[28]

Xu J, Guo S, Yin X, Li M, Su H, et al. 2023. Genomic, transcriptomic, and epigenomic analysis of a medicinal snake, Bungarus multicinctus, to provides insights into the origin of Elapidae neurotoxins. Acta Pharmaceutica Sinica B 13:2234−49

doi: 10.1016/j.apsb.2022.11.015
[29]

Chen S, Xu J, Liu C, Zhu Y, Nelson DR, et al. 2012. Genome sequence of the model medicinal mushroom Ganoderma lucidum. Nature Communications 3:913

doi: 10.1038/ncomms1923
[30]

Sonets IV, Dovidchenko NV, Ulianov SV, Yarina MS, Koshechkin SI, et al. 2023. Unraveling the polysaccharide biosynthesis potential of Ganoderma lucidum: A chromosome-level assembly using Hi-C sequencing. Journal of Fungi 9:1020

doi: 10.3390/jof9101020
[31]

Chen Z, Li J, Hou N, Zhang Y, Qiao Y. 2021. TCM-Blast for traditional Chinese medicine genome alignment with integrated resources. BMC Plant Biology 21:339

doi: 10.1186/s12870-021-03096-1