| [1] |
Wang K, Kirk PM, Yao YJ. 2020. Development trends in taxonomy, with special reference to fungi. |
| [2] |
Bhunjun CS, Niskanen T, Suwannarach N, Wannathes N, Chen YJ, et al. 2022. The numbers of fungi: are the most speciose genera truly diverse? |
| [3] |
Wang F, Wang K, Cai L, Zhao M, Kirk PM, et al. 2023. Fungal names: A comprehensive nomenclatural repository and knowledge base for fungal taxonomy. |
| [4] |
Hibbett D, Nagy LG, Nilsson RH. 2025. Fungal diversity, evolution, and classification. |
| [5] |
Hawksworth DL, Lücking R. 2017. Fungal diversity revisited: 2.2 to 3.8 million species. |
| [6] |
Phukhamsakda C, Nilsson RH, Bhunjun CS, de Farias ARG, Sun YR, et al. 2022. The numbers of fungi: contributions from traditional taxonomic studies and challenges of metabarcoding. |
| [7] |
Hyde KD, Saleh A, Aumentado HDR, Boekhout T, Bera I, et al. 2024. Fungal numbers: Global needs for a realistic assessment. |
| [8] |
Hyde KD, Noorabadi MT, Thiyagaraja V, He MQ, Johnston PR, et al. 2024b. The 2024 Outline of fungi and fungus-like taxa. |
| [9] |
AI-Tanlimi S, Charleston M, Clayton D, Demastes J, Gray R. 2003. Tangled trees: phylogeny, cospeciation, and coevolution. Chicago and London: University of Chicago Press. 350 pp. www.researchgate.net/profile/Jean-Pierre-Hugot-2/publication/280881048 |
| [10] |
Wiens JJ. 2004. Speciation and ecology revisited: phylogenetic niche conservatism and the origin of species. |
| [11] |
Seehausen O, Butlin RK, Keller I, Wagner CE, Boughman JW, et al. 2014. Genomics and the origin of species. |
| [12] |
Taylor JW, Turner E, Townsend JP, Dettman JR, Jacobson D. 2006. Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom fungi. |
| [13] |
Schmit JP, Mueller GM. 2007. An estimate of the lower limit of global fungal diversity. |
| [14] |
Taylor JW, Berbee ML. 2006. Dating divergences in the fungal tree of life: review and new analyses. |
| [15] |
Vilgalys R, Sun BL. 1994. Assessment of species distributions in Pleurotus based on trapping of airborne basidiospores. |
| [16] |
Hibbett DS. 2001. Shiitake mushrooms and molecular clocks: historical biogeography of Lentinula. |
| [17] |
Varga T, Krizsán K, Földi C, Dima B, Sánchez-García M, et al. 2019. Megaphylogeny resolves global patterns of mushroom evolution. |
| [18] |
Zhao H, Nie Y, Zong TK, Wang K, Lv ML, et al. 2023. Species diversity, updated classification and divergence times of the phylum Mucoromycota. |
| [19] |
He MQ, Cao B, Liu F, Boekhout T, Denchev TT, et al. 2024. Phylogenomics, divergence times and notes of orders in Basidiomycota. |
| [20] |
Song HB, Bau T. 2024. Resolving the polyphyletic origins of Pholiotina s.l. (Bolbitiaceae, Agaricales) based on Chinese materials and reliable foreign sequences. |
| [21] |
Tremble K, Henkel T, Bradshaw A, Domnauer C, Brown LM, et al. 2024. A revised phylogeny of Boletaceae using whole genome sequences. |
| [22] |
Dai YC, Wang Z, Binder M, Hibbett DS. 2006. Phylogeny and a new species of Sparassis (Polyporales, Basidiomycota): Evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes. |
| [23] |
Si J, Cui BK, He S, Dai YC. 2011. Optimization of conditions for laccase production by Perenniporia subacida and its application in dye decolorization. |
| [24] |
Si J, Meng G, Wu Y, Ma HF, Cui BK, et al. 2019. Medium composition optimization, structural characterization, and antioxidant activity of exopolysaccharides from the medicinal mushroom Ganoderma lingzhi. |
| [25] |
Vainio EJ, Hakanpää J, Dai YC, Hansen E, Korhonen K, et al. 2011. Species of Heterobasidion host a diverse pool of partitiviruses with global distribution and horizontal transmission between species. |
| [26] |
Wu F, Man X, Tohtirjap A, Dai Y. 2022. A comparison of polypore funga and species composition in forest ecosystems of China, North America, and Europe. |
| [27] |
Wu F, Zhou LW, Vlasák J, Dai YC. 2022c. Global diversity and systematics of Hymenochaetaceae with poroid hymenophore. |
| [28] |
Yuan Y, Bian LS, Wu YD, Chen JJ, Wu F, et al. 2023. Species diversity of pathogenic wood-rotting fungi (Agaricomycetes, Basidiomycota) in China. |
| [29] |
Ghobad-Nejhad M, Zhou LW, Tomšovský M, Angelini P, Cusumano G, et al. 2024. Unlocking nature's pharmacy: Diversity of medicinal properties and mycochemicals in the family Hymenochaetaceae (Agaricomycetes, Basidiomycota). |
| [30] |
Zhao H, Yuan HS, Cui YJ, Wang K, Wu F, et al. 2026. Global polypore diversity and distribution patterns. |
| [31] |
Liu ZB, Yuan Y, Dai YC, Liu HG, Vlasák J, et al. 2025. Global diversity and systematics of Hymenochaetaceae with non-poroid hymenophore. |
| [32] |
Chen JJ, Cui BK, Zhou LW, Korhonen K, Dai YC. 2015. Phylogeny, divergence time estimation, and biogeography of the genus Heterobasidion (Basidiomycota, Russulales). |
| [33] |
Zhao H, Zhou M, Liu XY, Wu F, Dai YC. 2022. Phylogeny, divergence time estimation and biogeography of the genus Onnia (Basidiomycota, Hymenochaetaceae). |
| [34] |
Spirin V, Runnel K, Vlasák J, Viner I, Barrett MD, et al. 2024. The genus Fomitopsis (Polyporales, Basidiomycota) reconsidered. |
| [35] |
Zhao H, Wu F, Maurice S, Pavlov IN, Krutovsky KV, et al. 2025. Large-scale phylogenomic insights into the evolution of the Hymenochaetales. |
| [36] |
Vlasák J. 2017. Trichaptum (Basidiomycota) in tropical America: a sequence study. |
| [37] |
Kossmann T, Costa-Rezende DH, Góes-Neto A, Drechsler-Santos ER. 2021. A new and threatened species of Trichaptum (Basidiomycota, Hymenochaetales) from urban mangroves of Santa Catarina Island, Southern Brazil. |
| [38] |
Mukhin VA, Knudsen H, Corfixen P, Zhuykova EV, Nepryakhin IO, et al. 2023. The genus Trichaptum in North Asia. |
| [39] |
Zhou M, Dai YC, Vlasák J, Liu HG, Yuan Y. 2023. Revision and updated systematics of Trichaptum s.l. (Hymenochaetales, Basidiomycota). |
| [40] |
Saha R, Dutta AK, Acharya K. 2024. Nigrohirschioporus violacaeruleum sp. nov. and a new record of Pallidohirschioporus brastagii (Basidiomycota, Hymenochaetales) from India. |
| [41] |
Murrill WA. 1904. The Polyporaceae of North America: IX. Inonotus, Sesia and monotypic genera. |
| [42] |
Ryvarden L, Gilbertson RL. 1994. European polypores 2. Norway: Fungiflora, Oslo. pp. 394–743 |
| [43] |
Núñez M, Ryvarden L. 2001. East Asian polypores 2. Polyporaceae s. lato. Synop Fungorum 14:170−522 |
| [44] |
Dawson SK, Berglund H, Ovaskainen O, Jonsson BG, Snäll T, et al. 2024. Fungal trait-environment relationships in wood-inhabiting communities of boreal forest patches. |
| [45] |
Zhang Y, Peng Z, Song Z, Schilling JS. 2025. Repeated measures of decaying wood reveal the success and influence of fungal wood endophytes. |
| [46] |
Yang XY, Feng T, Wang GQ, Ding JH, Li ZH, et al. 2014. Chemical constituents from cultures of the basidiomycete Trichaptum pargamenum. |
| [47] |
Payamnoor V, Kavosi MR, Nazari J. 2020. Polypore fungi of Caucasian alder as a source of antioxidant and antitumor agents. |
| [48] |
Wang Y, Hausner G, Rout PR, Yuan Q. 2025. Investigation of fungal mycelium-bound bio-foams from agricultural wastes as sustainable and eco-conscious packaging innovations. |
| [49] |
Ganeshaiah K, Barve N, Chandrachekara K, Swamy M, Uma Shaanker R. 2003. Predicting the potrntial geographical distribution of the sugarcane wooly aphid using GARP and DIVA-GIS. Current Science 85(11):1526−1528 |
| [50] |
Elith J, Graham CH, Anderson RP, Dudík M, Ferrier S, et al. 2006. Novel methods improve prediction of species' distributions from occurrence data. |
| [51] |
Peterson AT, Papeş M, Eaton M. 2007. Transferability and model evaluation in ecological niche modeling: a comparison of GARP and Maxent. |
| [52] |
Graham CH, Moritz C, Williams SE. 2006. Habitat history improves prediction of biodiversity in rainforest fauna. |
| [53] |
Kumar S, Stohlgren TJ. 2009. Maxent modeling for predicting suitable habitat for threatened and endangered tree Canacomyrica monticola in New Caledonia. Journal of Ecology and natural Environment 1(4):94−98 |
| [54] |
Adhikari D, Barik SK, Upadhaya K. 2012. Habitat distribution modelling for reintroduction of Ilex khasiana Purk., a critically endangered tree species of northeastern India. |
| [55] |
Hernandez PA, Graham CH, Master LL, Albert DL. 2006. The effect of sample size and species characteristics on performance of different species distribution modeling methods. |
| [56] |
Ortega-Huerta MA, Townsend Peterson A. 2008. Modeling ecological niches and predicting geographic distributions: a test of six presence-only methods. Revista mexicana de Biodiversidad 79(1):205−216 |
| [57] |
Young N, Carter L, Evangelista P. 2011. A MaxEnt model v3.3. e tutorial (ArcGIS v10). Natural Resource Ecology Laboratory, Colorado State University and the National Institute of Invasive Species Science. www.coloradoview.org/wp-content/coloradoviewData/trainingData/a-maxent-model-v8.pdf |
| [58] |
Yuan HS, Wei YL, Wang XG. 2015. Maxent modeling for predicting the potential distribution of Sanghuang, an important group of medicinal fungi in China. |
| [59] |
Mathur M, Mathur P. 2023. Prediction of global distribution of Ganoderma lucidum (Leys.) Karsten: a machine learning maxent analysis for a commercially important plant fungus. Indian Journal of Ecology 50(2):289−305 |
| [60] |
Zhang QY, Liu HG, Papp V, Zhou M, Dai YC, et al. 2023. New insights into the classification and evolution of Favolaschia (Agaricales, Basidiomycota) and its potential distribution, with descriptions of eight new species. |
| [61] |
Dai YC. 2010. Hymenochaetaceae (Basidiomycota) in China. |
| [62] |
Anonymous. 1969. Flora of British fungi. Colour identification chart. Her Majesty's Stationery Office, London. pp. 1–3 |
| [63] |
Petersen JH. 1996. The Danish Mycological Society's colour-chart. Foreningen til Svampekundskabens Fremme, Greve. pp. 1–6 |
| [64] |
White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols: a guide to methods and applications. vol. 18. Amsterdam: Elsevier. pp. 315−322 doi: 10.1016/B978-0-12-372180-8.50042-1 |
| [65] |
Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. |
| [66] |
Rehner SA, Buckley E. 2005. A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. |
| [67] |
Katoh K, Standley DM. 2013. MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. |
| [68] |
Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Symposium proceeding: Nucleic Acids Symposium Series, Oxford. vol. 41. pp. 95–98 |
| [69] |
Darriba D, Posada D, Kozlov AM, Stamatakis A, Morel B, Flouri T. 2020. ModelTest-NG: A new and scalable tool for the selection of DNA and protein evolutionary models. |
| [70] |
Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. |
| [71] |
Ronquist F, Teslenko M, van derMark P, Ayres DL, Darling A, et al. 2012. MrBayes 3.2: efficient bayesian phylogenetic inference and model choice across a large model space. |
| [72] |
Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, et al. 2014. BEAST 2: a software platform for Bayesian evolutionary analysis. |
| [73] |
Hibbett DS, Grimaldi D, Donoghue MJ. 1995. Cretaceous mushrooms in amber. |
| [74] |
Hibbett D, Grimaldi D, Donoghue M. 1997. Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of Homobasidiomycetes. |
| [75] |
Smith SY, Currah RS, Stockey RA. 2004. Cretaceous and Eocene poroid hymenophores from Vancouver Island, British Columbia. |
| [76] |
Berbee ML, Taylor JW. 2010. Dating the molecular clock in fungi – how close are we? |
| [77] |
Taylor TN, Hass H, Kerp H. 1999. The oldest fossil ascomycetes. |
| [78] |
Taylor TN, Hass H, Kerp H, Krings M, Hanlin RT. 2005. Perithecial ascomycetes from the 400 million year old Rhynie chert: an example of ancestral polymorphism. |
| [79] |
Yu Y, Blair C, He X. 2020. RASP 4: ancestral state reconstruction tool for multiple genes and characters. |
| [80] |
Yu Y, Harris AJ, Blair C, He X. 2015. RASP (Reconstruct Ancestral State in Phylogenies): a tool for historical biogeography. |
| [81] |
Ryvarden L, Johansen I. 1980. A preliminary polypore flora of East Africa. Norway: Fungiflora, Oslo. 636 pp |
| [82] |
Ryvarden L. 1981. Type studies in the Polyporaceae. 13. Species described by JH Leveille. Mycotaxon 13:175−186 |
| [83] |
Corner EJH. 1987. Ad Polyporaceas IV. The genera Daedalea, Flabellophora, Flavodon, Gloeophyllum, Heteroporus, Irpex, Lenzites, Microporellus, Nigrofomes, Nigroporus, Oxyporus, Paratrichaptum, Rigidoporus, Scenidium, Trichaptum, Vanderbylia, and Steccherinum. Beih Nova Hedwigia 86:1−265 |
| [84] |
Dai YC. 2000. A checklist of polypores from Northeast China. |
| [85] |
Hattori T. 2001a. Type studies of the polypores described by E.J.H. Corner from Asia and West Pacific areas II. Species described in Gloeophyllum, Heteroporus, Microporellus, Oxyporus, Paratrichaptum, and Rigidoporus. |
| [86] |
Hattori T. 2001b. Type studies of the polypores described by EJH Corner from Asia and West Pacific Areas III. Species described in Trichaptum, Albatrellus, Boletopsis, Diacanthodes, Elmerina, Fomitopsis and Gloeoporus. Mycoscience 42:423−431 |
| [87] |
Ryvarden L, Iturriaga T. 2003. Studies in neotropical polypores 10. |
| [88] |
He MQ, Zhao RL, Hyde KD, Begerow D, Kemler M, et al. 2019. Notes, outline and divergence times of Basidiomycota. |
| [89] |
Wu G, Wu K, Halling RE, Horak E, Xu J, et al. 2023. The rapid diversification of Boletales is linked to Early Eocene and Mid-Miocene Climatic Optima. |
| [90] |
Hay WW, Floegel S. 2012. New thoughts about the Cretaceous climate and oceans. |
| [91] |
Crisp MD, Cook LG. 2011. Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms. |
| [92] |
Jokat W, Boebel T, König M, Meyer U. 2003. Timing and geometry of early Gondwana breakup. |
| [93] |
Hackel J, Henkel TW, Moreau PA, De Crop E, Verbeken A, et al. 2022. Biogeographic history of a large clade of ectomycorrhizal fungi, the Russulaceae, in the Neotropics and adjacent regions. |
| [94] |
Cui YJ, Wang CG, Dai YC, Liu S, Ren YH, et al. 2026. Phylogeny, divergence times, and biogeography of the phytopathogenic fungal genus Phaeolus (Basidiomycota, Polyporales). |
| [95] |
Zhao H, Wu F, Dai YC, Vlasák J, Ghobad-Nejhad M, et al. 2025a. Divergence time and biogeography of the fungal genus Porodaedalea (Basidiomycota, Hymenochaetales), obligate phytopathogens on coniferous trees. |
| [96] |
Wang XW, May TW, Liu SL, Zhou LW. 2021. Towards a natural classification of Hyphodontia sensu lato and the trait evolution of basidiocarps within Hymenochaetales (Basidiomycota). |
| [97] |
Skrede I, Engh IB, Binder M, Carlsen T, Kauserud H, et al. 2011. Evolutionary history of Serpulaceae (Basidiomycota): molecular phylogeny, historical biogeography and evidence for a single transition of nutritional mode. |
| [98] |
Li J, Han LH, Liu XB, Zhao ZW, Yang ZL. 2020. The saprotrophic Pleurotus ostreatus species complex: late eocene origin in East Asia, multiple dispersal, and complex speciation. |
| [99] |
Zhao H, Cui YJ, Guan QX, Wang K, Zhuang L, et al. 2025. Global fungal diversity and distribution patterns within the order Hymenochaetales (Agaricomycetes, Basidiomycota). |
| [100] |
Wu F, Fang X, Yang Y, Dupont-Nivet G, Nie J, et al. 2022a. Reorganization of Asian climate in relation to Tibetan Plateau uplift. |
| [101] |
Zachos J, Pagani M, Sloan L, Thomas E, Billups K. 2001. Trends, rhythms, and aberrations in global climate 65 Ma to present. |
| [102] |
Donoghue MJ, Sanderson MJ. 2015. Confluence, synnovation, and depauperons in plant diversification. |
| [103] |
Sánchez-García M, Ryberg M, Khan FK, Varga T, Nagy LG, et al. 2020. Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi. |
| [104] |
Bian LS, Wu F, Dai YC. 2016. Two new species of Coltricia (Hymenochaetaceae, Basidiomycota) from southern China based on evidence from morphology and DNA sequence data. |
| [105] |
Wang W, Cawood PA, Pandit MK, Xia X, Raveggi M, et al. 2021. Fragmentation of South China from greater India during the Rodinia-Gondwana transition. |
| [106] |
Zhou LW, Wang XW, Vlasák J, Ren GJ. 2018. Resolution of phylogenetic position of Nigrofomitaceae within Hymenochaetales (Basidiomycota) and Nigrofomes sinomelanoporus sp. nov. (Nigrofomitaceae) from China. |
| [107] |
Vu D, Groenewald M, de Vries M, Gehrmann T, Stielow B, et al. 2019. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. |
| [108] |
Jang Y, Jang S, Lee J, Lee H, Lim YW, et al. 2016. Diversity of wood-inhabiting polyporoid and Corticioid fungi in odaesan national park, Korea. |
| [109] |
Hoffmann K, Telle S, Walther G, Eckhart M, Kirchmair M, et al. 2008. Diversity, genotypic identification, ultrastructural and phylogenetic characterization of zygomycetes from different ecological habitats and climatic regions: limitations and utility of nuclear ribosomal DNA barcode markers. In Current Advances in Molecular Mycology, eds. Gherbawy Y, Mach RL, Rai M. Hauppauge: Nova Science Pub Inc. pp. 263–312 |
| [110] |
Pitkäranta M, Meklin T, Hyvärinen A, Paulin L, Auvinen P, et al. 2008. Analysis of fungal flora in indoor dust by ribosomal DNA sequence analysis, quantitative PCR, and culture. |
| [111] |
Cho SE, Kwag YN, Jo JW, Han SK., Oh SH, et al. 2020. Macrofungal diversity of urbanized areas in southern part of Korea. |
| [112] |
Ko KS, Jung HS. 2002. Three nonorthologous ITS1 types are present in a polypore fungus Trichaptum abietinum. |
| [113] |
Ogura-Tsujita Y, Gebauer G, Xu H, Fukasawa Y, Umata H, et al. 2018. The giant mycoheterotrophic orchid Erythrorchis altissima is associated mainly with a divergent set of wood-decaying fungi. |
| [114] |
Papan S, Preedanon S, Saengkaewsuk S, Klaysuban A, Kobmoo N, et al. 2023. Genetic diversity of culturable fungi associated with scleractinian corals in the Gulf of Thailand. |
| [115] |
Ko KS, Hong SG, Jung HS. 1997. Phylogenetic analysis of Trichaptum based on nuclear 18S, 5.8S and ITS ribosomal DNA sequences. |