| [1] |
Aguilar A. 1996. Extremophile research in the European Union: from fundamental aspects to industrial expectations. |
| [2] |
Cooney DG, Emerson R. 1964. Thermophilic fungi: an account of their biology, activities, and classification. San Francisco: W.H. Freeman. 188 pp. https://search.library.oregonstate.edu/discovery/fulldisplay/alma9931861201865/01ALLIANCE_OSU:OSU |
| [3] |
Dix NJ, Webster J. 1995. Fungal Ecology. 1stEdition. Dordrecht, The Netherlands: Chapman and Hall. 549 pp. doi: 10.1007/978-94-011-0693-1 |
| [4] |
Stetter KO. 1999. Extremophiles and their adaptation to hot environments. |
| [5] |
Barns SM, Delwiche CF, Palmer JD, Pace NR. 1996. Perspectives on archaeal diversity, thermophily, and monophyly from environmental rRNA sequences. |
| [6] |
Maheshwari R, Bharadwaj G, Bhat MK. 2000. Thermophilic fungi: their physiology and enzymes. |
| [7] |
Dijksterhuis J. 2007. Heat-resistant ascospores. In Food Mycology. 1st Edition. Boca Raton: CRC press. 424 pp. doi: 10.1201/9781420020984 |
| [8] |
Mouchacca J. 1997. Thermophilic fungi: biodiversity and taxonomic status. |
| [9] |
Steindorff AS, Aguilar-Pontes MV, Robinson AJ, Andreopoulos B, LaButti K, et al. 2024. Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses. |
| [10] |
Ladle RJ, Firmino JVL, Malhado ACM, Rodríguez-Durán A. 2012. Unexplored diversity and conservation potential of Neotropical hot caves. |
| [11] |
Rodríguez-Durán A, Nieves NA, Avilés Ruiz Y, Martínez Y, Andújar-Morales K. 2023. Population estimates of bat assemblages from hot caves in Puerto Rico. |
| [12] |
Hsu MJ, Agoramoorthy G. 2001. Occurrence and diversity of thermophilous soil microfungi in forest and cave ecosystems of Taiwan. Fungal Diversity 7:27−33 |
| [13] |
Stomeo F, Ellersdorfer G, Sterflinger K, González-Grau JM, Sáiz-Jiménez C. 2008. Análisis de la diversidad de hongos en la Cueva de Doña Trinidad (Ardales, Almería). 9ª Reunión de la RTPHC Avances Recientes en la Investigación sobre Patrimonio, Sevilla, España, 4−5 March, 2008. España: Consejo Superior de Investigaciones Científicas. pp. 65−66 http://hdl.handle.net/10261/39104 |
| [14] |
Savković Ž, Popović S, Stupar M. 2025. Unveiling the subterranean symphony: a comprehensive study of cave fungi revealed through national center for biotechnology sequences. |
| [15] |
Salazar-Hamm PS, Homan FE, Good SA, Hathaway JJM, Clements AE, et al. 2025. Subterranean marvels: microbial communities in caves and underground mines and their promise for natural product discovery. |
| [16] |
Bento JT, Moreira G, Pinto E, da Silva PG, Rebelo H, et al. 2025. Airborne fungal spore diversity assessment using culture-dependent and metabarcoding approaches in bat-inhabited natural and anthropogenic roosts in Portugal. |
| [17] |
Dimkić I, Fira D, Janakiev T, Kabić J, Stupar M, et al. 2021. The microbiome of bat guano: for what is this knowledge important? |
| [18] |
Bazzoni E, Cacciotto C, Zobba R, Pittau M, Martella V, et al. 2024. Bat ecology and microbiome of the gut: a narrative review of associated potentials in emerging and zoonotic diseases. |
| [19] |
Nieves-Rivera ÁM, Santos-Flores CJ, Dugan FM, Miller TE. 2009. Guanophilic fungi in three caves of southwestern Puerto Rico. |
| [20] |
Natal-Molina GM. 2013. Inventario de hongos asociados a suelo enriquecido con guano de murciélago en cueva de los culebrones, en la Reserva Mata de Plátano (Arecibo, Puerto Rico). Thesis. University of Puerto Rico, Mayagüez Campus, USA. 83 pp. https://hdl.handle.net/20.500.11801/234 |
| [21] |
Legorreta-Castañeda AJ, Guerra-Sánchez G, García-Gutiérrez K, Olicón-Hernández DR. 2024. Biotechnological insights into extracellular enzyme production by thermotolerant fungi from hot springs and caves: morphology, pellets formation, and protease production. |
| [22] |
Nieves-Morales R, Paez-Diaz JA, Rivera-Lopez EO, Pérez-Santos N, Borrero-Villabol SJ, et al. 2025. Characterization of fungal communities in Puerto Rican caves using internal transcribed spacer sequencing. |
| [23] |
Ingersoll JG. 2023. Thermophilic fungi as the microbial agents of choice for the industrial co-fermentation of wood wastes and nitrogen-rich organic wastes to bio-methane. |
| [24] |
Witfeld F, Begerow D, Guerreiro MA. 2021. Improved strategies to efficiently isolate thermophilic, thermotolerant, and heat-resistant fungi from compost and soil. |
| [25] |
Cenis JL. 1992. Rapid extraction of fungal DNA for PCR amplification. |
| [26] |
White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols, eds. Innis MA, Gelfand DH, White TJ. Amsterdam: Elsevier. pp. 315−322 doi: 10.1016/b978-0-12-372180-8.50042-1 |
| [27] |
Nilsson RH, Larsson KH, Taylor AFS, Bengtsson-Palme J, Jeppesen TS, et al. 2019. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. |
| [28] |
Geiser DM, Klich MA, Frisvad JC, Peterson SW, Varga J, et al. 2007. The current status of species recognition and identification in Aspergillus. |
| [29] |
Raja HA, Miller AN, Pearce CJ, Oberlies NH. 2017. Fungal identification using molecular tools: a primer for the natural products research community. |
| [30] |
Stielow JB, Lévesque CA, Seifert KA, Meyer W, Irinyi L, et al. 2015. One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes. |
| [31] |
Lima JMS, Barbosa RN, Bento DM, Barbier E, Bernard E, et al. 2024. Aspergillus, Penicillium, and Talaromyces (Eurotiales) in Brazilian caves, with the description of four new species. |
| [32] |
Vanderwolf KJ, Malloch D, McAlpine DF, Forbes GJ. 2013. A world review of fungi, yeasts, and slime moldes in caves. |
| [33] |
Fabri JHTM, Rocha MC, Fernandes CM, Persinoti GF, Ries LNA, et al. 2021. The heat shock transcription factor HsfA is essential for thermotolerance and regulates cell wall integrity in Aspergillus fumigatus. |
| [34] |
Korfanty G, Heifetz E, Xu J. 2023. Assessing thermal adaptation of a global sample of Aspergillus fumigatus: implications for climate change effects. |
| [35] |
Mosqueda-Martínez E, Chiquete-Félix N, Castañeda-Tamez P, Ricardez-García C, Gutiérrez-Aguilar M, Uribe-Carvajal S, et al. 2024. In Rhodotorula mucilaginosa, active oxidative metabolism increases carotenoids to inactivate excess reactive oxygen species. |
| [36] |
Domínguez-Moñino I, Jurado V, Hermosín B, Sáiz-Jiménez C. 2012. Aerobiología de cuevas andaluzas. In Las cuevas turísticas como activos económicos: conservación e innovación, eds. Durán JJ, Robledo PA. España: Asociación de Cuevas Turísticas Españolas. pp. 299–308 www.researchgate.net/publication/369626921_Las_cuevas_turisticas_como_activos_economicos_conservacion_e_innovacion |
| [37] |
Hermosín B, Nováková A, Jurado V, Láiz L, Porca E, et al. 2010. Observatorio microbiológico de cuevas: evaluación y control de comunidades fúngicas en cuevas sometidas al impacto de actividades turísticas. In Cuevas: Patrimonio, Naturaleza, Cultura y Turismo, eds. Durán JJ, Carrasco F. España: Asociación de Cuevas Turísticas Españolas. pp. 513−520 https://digital.csic.es/bitstream/10261/38278/1/Observatorio%20microbiol%C3%B3gico%20de%20cuevas.pdf |
| [38] |
de Oliveira TB, Gomes E, Rodrigues A. 2015. Thermophilic fungi in the new age of fungal taxonomy. |
| [39] |
Tomazin R, Kišek TC, Janko T, Triglav T, Smrdel KS, et al. 2024. Comparison of culture-dependent and culture-independent methods for routine identification of airborne microorganisms in speleotherapeutic caves. |