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Figure 1.
Phylogram generated from ML analysis based on ITS and LSU sequence data representing Dermateaceae. The tree topology of the ML analysis is similar to the Bayesian analysis. Bootstrap values for ML equal to or greater than 70% and BYPP values greater than 0.90 (the rounding of values to two decimal proportions) are labeled at the nodes. Strains of the newly described species are in red, while type strains are in bold.
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Figure 2.
Phylogenetic tree based on analysis of a combined ITS, LSU, rpb2, and tub2 sequence dataset. Bootstrap support values for ML equal to or greater than 70% and BYPP equal to or greater than 0.90 are shown as ML/BI above the nodes. The ex-type strains are in bold and the new isolate in this study is in red. The tree is rooted with Infundichalara microchona (CBS 175.74). The scale bar represents the expected number of nucleotide substitutions per site.
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Figure 3.
Phlyctema yunnanensis (HKAS 128745, holotype). (a), (b) Apothecia on natural substrate. (c) Sections through apothecium. (d) Longitudinal section of apothecium. (e) Excipular structure of margin. (f) Paraphyses. (g)–(k) Asci. (l)–(q) Ascospores. Scale bars: (d) = 100 μm, (e)–(k) = 30 μm, (l)–(q) = 10 μm.
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Species Strain number ITS LSU rpb 2 tub2 Coleophoma caliginosa CBS 124806T KR859090 KR858881 KR859330 KR859293 Coleophoma camelliae CBS 101376T KU728481 KU728521 NA KU728597 Coleophoma coptospermatis CPC 19864T KU728483 KU728523 NA NA Coleophoma cylindrospora CBS 591.70T KU728486 KU728526 NA NA Coleophoma ericicola CBS 301.72T KU728488 KU728528 NA NA Coleophoma eucalypticola CBS 124810T GQ303279 GQ303310 KR859331 KR859294 Coleophoma eucalyptorum CPC 19294 KF251240 KF251743 NA NA Coleophoma paracylindrospora CBS 109074T KU728491 KU728531 NA NA Coleophoma parafusiformis CBS 132692T KU728494 KU728534 NA NA Coleophoma proteae CBS 132532T JX069866 JX069850 NA NA Corniculariella rhamni MFLUCC 16-1446T MT185495 MT183457 MT432216 NA Davidhawksworthia ilicicola CBS 734.94T NR_154008 NG_067307 NA NA Davidhawksworthia ilicicola CBS 261.95 KU728516 KU728555 NA NA Dermea cerasi MFLU 16-0929 MT185502 MT183464 MT432221 NA Dermea cerasi MFLUCC 16-1147T MT185501 MT183463 MT432220 NA Infundichalara microchona CBS 175.74T KR859078 HQ609479 KR859318 KR859284 Neodermea rossica MFLUCC 17-2506T MT185530 MT183493 MT432236 NA Neofabraea actinidiae CBS 121403T KR859079 KR858870 KR859319 KR859285 Neofabraea brasiliensis CNPUV499T KR107002 KR107002 NA KR107012 Neofabraea brunneipila MFLU 15-0231T MK584984 MK592004 NA NA Neofabraea inaequalis CBS 326.75T KR859081 KR858872 KR859321 KR859287 Neofabraea kienholzii CBS 126461T KR859082 KR858873 KR859322 KR859288 Neofabraea krawtzewii CBS 102867 KR859084 KR858875 KR859324 AF281459 Neofabraea malicorticis CBS 122030T KR859086 KR858877 KR859326 KR859291 Neofabraea perennans CBS 275.29 KR859088 KR858879 KR859328 KR859292 Neofabraea perennans CBS 453.64 KR859089 KR858880 KR859329 AF281474 Neofabraea salicina CBS 148445T OK664708 OK663747 OK651161 NA Neogloeosporidina pruni MFLU 16-2153T NR_169721 MT183501 MT432239 NA Pezicula acericola CBS 239.97 KR859093 KR858884 KF376214 KF376283 Pezicula aurantiaca CBS 201.46 KR859102 KR858893 KF376210 KF376335 Pezicula californiae CBS 124805T KR859104 KR858895 KR859332 KR859295 Pezicula carpinea CBS 923.96T KR859108 KR858899 KF376158 KF376279 Pezicula cinnamomea CBS 239.96 KR859124 KR858915 KF376165 KF376323 Pezicula cinnamomea CBS 240.96 KR859125 KR858916 KF376163 KF376325 Pezicula cornina CBS 285.39 KR859163 KR858955 KR859333 KR859296 Pezicula eucrita CBS 259.97 KR859179 KR858971 KF376205 KF376333 Pezicula fagacearum CBS 112400T KR859201 KR858993 KR859335 KR859298 Pezicula frangulae CBS 100244 KR859204 KR858996 KF376211 KF376285 Pezicula italica MFLU 16-1284T NR_170044 NG_073839 NA NA Pezicula microspora CBS 124641T KR859212 KR859004 KR859337 KR859300 Pezicula neocinnamomea CBS 100248T KR859213 KR859005 KF376209 KF376328 Pezicula neoheterochroma CBS 127388T KR859221 KR859013 KR859338 KR859301 Pezicula neosporulosa CBS 101.96T KR859223 KR859015 KF376193 KF376305 Pezicula ocellata CBS 268.39 KR859232 KR859024 KR859339 KR859302 Pezicula pseudocinnamomea CBS 101000T KR859235 KR859027 KR859340 KR859303 Pezicula rubi CBS 253.97 KR859250 KR859042 KF376204 KF376329 Pezicula sporulosa CBS 224.96T NR_137161 NG_069840 KF376201 KF376326 Phlyctema phoenicis MFLU 15-1243 MT449717 MT449705 MT432248 NA Phlyctema phoenicis CPC 29372T KY173432 KY173522 NA NA Phlyctema phoenicis CBS 147066 ON811524 ON811581 NA NA Phlyctema vagabunda CBS 109875T KR859275 KR859069 KR859346 AY064702 Phlyctema vagabunda CBS 304.62 KR859276 KR859070 KR859347 KR859310 Phlyctema vagabunda ATCC 38338 AF281366 NA NA AF281456 Phlyctema vincetoxici CBS 102469 KR859277 KR859071 KR859348 KR859311 Phlyctema vincetoxici CBS 123727T KR859278 KR859072 KR859349 KR859312 Phlyctema yunnanensis HKAS 128745T PQ456177 PQ456179 NA NA Phlyctema yunnanensis HKAS 128746 PQ456178 PQ456180 NA NA Pseudofabraea citricarpa CBS 130297T KR859279 KR859073 KR859350 KR859313 Pseudofabraea citricarpa CBS 130532 KR859280 KR859074 KR859351 KR859314 Pseudoxenochalara grumantiana CBS 148028 OM774424 OM776920 OM782293 NA Rhizodermea veluwensis CBS 110605T KR859282 KR859076 KR859353 KR859316 Rhizodermea veluwensis CBS 110615 KR859283 KR859077 KR859354 KR859317 Xenochalara juniperi MEA-B5-SW JX869564 NA NA NA Xenochalara juniperi CBS 670.75 AF184887 NA NA NA The new sequences are indicated in bold. The ex-type strains are indicated with 'T'. 'NA' indicates that the sequence is unavailable. Table 1.
GenBank accession numbers of the strains used for phylogenetic analyses in this study.
Figures
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Tables
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