doi:10.48130/SIF-2023-0001

[1]

Hongsanan S, Hyde KD, Phookamsak R, Wanasinghe DN, McKenzie EHC, et al. 2020. Refined families of Dothideomycetes: Dothideomycetidae and Pleosporomycetidae. Mycosphere 11:1553−2107

doi: 10.5943/mycosphere/11/1/13

[2]

Wijayawardene NN, Hyde KD, Al-Ani LKT, Tedersoo L, Haelewaters D, et al. 2020. Outline of Fungi and fungus-like taxa. Mycosphere 11:1060−456

doi: 10.5943/mycosphere/11/1/8

[3]

He L, Cheng H, Htun AA, Ge H, Xia Z, et al. 2021. Phylogeny and taxonomy of two new Alternaria (Ascomycota: Pleosporaceae) species in section Gypsophilae from China. Mycological Progress 20:355−63

doi: 10.1007/s11557-021-01676-x

[4]

He L, Cheng H, Zhao L, Htun AA, Yu ZH, et al. 2021. Morphological and molecular identification of two new Alternaria species (Ascomycota, Pleosporaceae) in section Radicina from China. MycoKeys 78:187−98

doi: 10.3897/mycokeys.78.64853

[5]

Index Fungorum. 2022. www.indexfungorum.org/names/Names.asp (Accessed 4 July 2022)

[6]

Gannibal PB, Orina AS, Gasich EL. 2022. A new section for Alternaria helianthiinficiens found on sunflower and new asteraceous hosts in Russia. Mycological Progress 21:34

doi: 10.1007/s11557-022-01780-6

[7]

Ghafri AA, Maharachchikumbura SSN, Hyde KD, Al-Saady NA, Al-Sadi AM. 2019. A new section and a new species of Alternaria encountered from Oman. Phytotaxa 405:279−89

doi: 10.11646/phytotaxa.405.6.1

[8]

Thomma BP. 2003. Alternaria spp.: from general saprophyte to specific parasite. Molecular Plant Pathology 4:225−36

doi: 10.1046/j.1364-3703.2003.00173.x

[9]

Ma Y, Qiao L, Shi W, Zhang A, Gao J, et al. 2010. Metabolites produced by an endophyte Alternaria alternata isolated from Maytenus hookeri. Chemistry of natural compounds 46:504−6

doi: 10.1007/s10600-010-9662-x

[10]

Polizzotto R, Andersen B, Martini M, Grisan S, Assante G, et al. 2012. A polyphasic approach for the characterization of endophytic Alternaria strains isolated from grapevines. Journal of Microbiological Methods 88:162−71

doi: 10.1016/j.mimet.2011.11.009

[11]

Woudenberg JHC, Groenewald JZ, Binder M, Crous PW. 2013. Alternaria redefined. Studies in Mycology 75:171−212

doi: 10.3114/sim0015

[12]

Woudenberg JHC, Seidl MF, Groenewald JZ, de Vries M, Stielow JB, et al. 2015. Alternaria section Alternaria: Species, formae speciales or pathotypes. Studies in Mycology 82:1−21

doi: 10.1016/j.simyco.2015.07.001

[13]

Lawrence DP, Gannibal PB, Dugan FM, Pryor BM. 2014. Characterization of Alternaria isolates from the infectoria species-group and a new taxon from Arrhenatherum, Pseudoalternaria arrhenatheria sp. nov.. Mycological Progress 13:257−76

doi: 10.1007/s11557-013-0910-x

[14]

Lawrence DP, Gannibal PB, Peever TL, Pryor BM. 2013. The sections of Alternaria: formalizing species-group concepts. Mycologia 105:530−46

doi: 10.3852/12-249

[15]

Lawrence DP, Rotondo F, Gannibal PB. 2016. Biodiversity and taxonomy of the pleomorphic genus Alternaria. Mycological Progress 15:3

doi: 10.1007/s11557-015-1144-x

[16]

Rashmi M, Kushveer JS, Sarma VV. 2019. A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10:798−1079

doi: 10.5943/mycosphere/10/1/19

[17]

Farr DF, Rossman AY. 2021. Fungal databases, US National Fungal Collections, ARS USDA. http://nt.ars-grin.gov/fungaldatabases. (Accessed on 21 May 2021)

[18]

Ellis MB. 1971. Dematiaceous hyphomycetes. Kew, Surrey, England: Commonwealth Mycology Institute. pp. 464–97

[19]

Ellis MB. 1976. More Dematiaceous Hyphomycetes. Kew, Surrey, England: Commonwealth Mycological Institute. pp. 411–27

[20]

De Hoog GS, Horré R. 2002. Molecular taxonomy of the Alternaria and Ulocladium species from humans and their identification in the routine laboratory. Mycoses 45:259−76

doi: 10.1046/j.1439-0507.2002.00747.x

[21]

Runa F, Park MS, Pryor BM. 2009. Ulocladium systematics revisited: phylogeny and taxonomic status. Mycological Progress 8:35

doi: 10.1007/s11557-008-0576-y

[22]

Woudenberg JHC, Truter M, Groenewald JZ, Crous PW. 2014. Large-spored Alternaria pathogens in section Porri disentangled. Study in Mycology 79:1−47

doi: 10.1016/j.simyco.2014.07.003

[23]

Mac Kinon SL, Keifer P, Ayer WA. 1999. Components from the phytotoxic extract of Alternaria brassicicola, a black spot pathogen of canola. Phytochemistry 51:215−21

doi: 10.1016/S0031-9422(98)00732-8

[24]

Ariyawansa HA, Hyde KD, Jayasiri SC, Buyck B, Chethana KWT, et al. 2015. Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 75:27−274

doi: 10.1007/s13225-015-0346-5

[25]

Jayawardena RS, Hyde KD, Jeewon R, Ghobad-Nejhad M, Wanasinghe DN, et al. 2019. One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50 (2019). Fungal Diversity 94:41−129

doi: 10.1007/s13225-019-00418-5

[26]

Jayawardena RS, Hyde KD, McKenzie EHC, Jeewon R, Phillips AJL, et al. 2019. One stop shop III: taxonomic update with molecular phylogeny for important phytopathogenic genera: 51–75 (2019). Fungal Diversity 98:77−160

doi: 10.1007/s13225-019-00433-6

[27]

Meena M, Gupta SK, Swapnil P, Zehra A, Dubey MK, et al. 2017. Alternaria toxins: potential virulence factors and genes related to pathogenesis. Frontiers in Microbiology 8:1451

doi: 10.3389/fmicb.2017.01451

[28]

Tralamazza SM, Piacentini KC, Iwase CH, de Oliveira Rocha L. 2018. Toxigenic Alternaria species: impact in cereals worldwide. Current Opinion in Food Science 23:57−63

doi: 10.1016/j.cofs.2018.05.002

[29]

Lopes L, Borges-Costa J, Soares-Almeida L, Filipe P, Neves F, et al. 2013. Cutaneous alternariosis caused by Alternaria infectoria: three cases in kidney transplant patients. Healthcare. Multidisciplinary Digital Publishing Institute 1:100−6

doi: 10.3390/healthcare1010100

[30]

Mirhendi H, Fatemi MJ, Bateni H, Hajabdolbaghi M, Geramishoar M, et al. 2013. First case of disseminated phaeohyphomycosis in an immunocompetent individual due to Alternaria malorum. Medical Mycology 51:196−202

doi: 10.3109/13693786.2012.707338

[31]

Chowdhary A, Meis JF, Guarro J, De Hoog G, Kathuria S, et al. 2014. ESCMID and ECMM joint clinical guidelines for the diagnosis and management of systemic phaeohyphomycosis: diseases caused by black fungi. Clinical Microbiology and Infection 20:47−75

doi: 10.1111/1469-0691.12515

[32]

Kustrzeba-Wójcicka I, Siwak E, Terlecki G, Wolańczyk-Mędrala A, Mędrala W. 2014. Alternaria alternata and its allergens: a comprehensive review. Clinical Reviews in Allergy & Immunology 47:354−65

doi: 10.1007/s12016-014-8447-6

[33]

Lyskova P, Kubanek M, Hubka V, Sticova E, Voska L, et al. 2017. Successful posaconazole therapy of disseminated alternariosis due to Alternaria infectoria in a heart transplant recipient. Mycopathologia 182:297−303

doi: 10.1007/s11046-016-0094-4

[34]

Cardona S, Yusef S, Silva E, Bustos G, Torres MI, et al. 2020. Cerebral phaeohyphomycosis caused by Alternaria spp.: A case report. Medical Mycology Case Reports 27:11−13

doi: 10.1016/j.mmcr.2019.12.001

[35]

von Esenbeck CGN. 1816. Das system der pilze und schwämme. Ein versuch. In der Stahelschen Buchhandlung. Germany. 457 pp.

[36]

von Keissler K. 1912. Zur kenntnis der pilzflora krains. In Beihefte zum botanischen Centralblatt. vol. 29. Leipzig, Verlag von G. Thiem, Germany. pp. 395−440

[37]

Fries EM. 1832. Systema mycologicum. Lundae, Ex Officina Berlingiana 1821−[1832]. vol. 3. Greifswald, Germany. 500 pp. https://doi.org/10.5962/bhl.title.5378

[38]

Simmons EG. 2007. Alternaria: an identification manual. CBS Biodiversity Series. vol. 6. Utrecht, the Netherlands: Centraalbureau voor Schimmelcultures. 780 pp.

[39]

Rossman AY, Crous PW, Hyde KD, Hawksworth DL, Aptroot A, et al. 2015. Recommended names for pleomorphic genera in Dothideomycetes. IMA Fungus 6:507−23

doi: 10.5598/imafungus.2015.06.02.14

[40]

Simmons EG. 1986. Alternaria themes and variations (17–21). Mycotaxon 25:203−16

[41]

Roberts RG, Reymond ST, Andersen B. 2000. RAPD fragment pattern analysis and morphological segregation of small-spored Alternaria species and species groups. Mycological Research 104:151−60

doi: 10.1017/S0953756299001690

[42]

Somma S, Pose G, Pardo A, Mule G, Pinto VF, et al. 2011. AFLP variability, toxin production, and pathogenicity of Alternaria species from Argentinean tomato fruits and puree. International Journal of Food Microbiology 145:414−19

doi: 10.1016/j.ijfoodmicro.2011.01.006

[43]

Roberts RG, Bischoff JF, Reymond ST. 2012. Differential gene expression in Alternaria gaisen exposed to dark and light. Mycological Progress 11:373−82

doi: 10.1007/s11557-011-0752-3

[44]

Stewart JE, Andrew M, Bao X, Chilvers MI, Carris LM, et al. 2013. Development of sequence characterized amplified genomic regions (SCAR) for fungal systematics: proof of principle using Alternaria, Ascochyta and Tilletia. Mycologia 105:1077−86

doi: 10.3852/12-287

[45]

Peever TL, Su G, Carpenter-Boggs L, Timmer LW. 2004. Molecular systematics of citrus-associated Alternaria species. Mycologia 96:119−34

doi: 10.1080/15572536.2005.11833002

[46]

Andrew M, Peever TL, Pryor BM. 2009. An expanded multilocus phylogeny does not resolve morphological species within the small-spored Alternaria species complex. Mycologia 101:95−109

doi: 10.3852/08-135

[47]

Poursafar A, Ghosta Y, Javan-Nikkhah M. 2017. Identification of Alternaria species from the section Infectoriae associated with wheat and barley black (sooty) head mold in Iran. Journal of Taxonomy and Biosistematics 9:13−30

doi: 10.22108/tbj.2018.100893.1001

[48]

Patriarca A, da Cruz Cabral L, Pavicich MA, Nielsen KF, Andersen B. 2019. Secondary metabolite profiles of small-spored Alternaria support the new phylogenetic organization of the genus. International Journal of Food Microbiology 291:135−43

doi: 10.1016/j.ijfoodmicro.2018.11.022

[49]

Hong SG, Cramer RA, Lawrence CB, Pryor BM. 2005. Alt a 1 allergen homologs from Alternaria and related taxa: analysis of phylogenetic content and secondary structure. Fungal Genetics and Biology 42:119−29

doi: 10.1016/j.fgb.2004.10.009

[50]

Elliott JA. 1917. Taxonomic characters of the genera Alternaria and Macrosporium. American Journal of Botany 4:439−76

doi: 10.1002/j.1537-2197.1917.tb05467.x

[51]

Wiltshire SP. 1933. The foundation species of Alternaria and Macrosporium. Transactions of the British Mycological Society 18:135−60, IN1-IN3

doi: 10.1016/S0007-1536(33)80003-9

[52]

Neergaard P. 1945. Danish species of Alternaria and Stemphylium. London: Oxford University Press. 560 pp

[53]

Joly P. 1964. Le genre Alternaria. Encyclopedia of Mycology 33: 1–250

[54]

Pryor BM, Gilbertson RL. 2000. Molecular phylogenetic relationships amongst Alternaria species and related fungi based upon analysis of nuclear ITS and mt SSU rDNA sequences. Mycological Research 104:1312−21

doi: 10.1017/S0953756200003002

[55]

Lawrence DP, Park MS, Pryor BM. 2012. Nimbya and Embellisia revisited, with nov. comb. for Alternaria celosiae and A. perpunctulata. Mycological Progress 11:799−815

doi: 10.1007/s11557-011-0793-7

[56]

Grum-Grzhimaylo A, Georgieva ML, Bondarenko SA, Debets AJM, Bilanenko EN. 2016. On the diversity of fungi from soda soils. Fungal Diversity 76:27−74

doi: 10.1007/s13225-015-0320-2

[57]

Chou HH, Wu WS. 2002. Phylogenetic analysis of internal transcribed spacer regions of the genus Alternaria, and the significance of filament-beaked conidia. Mycological Research 106:164−69

doi: 10.1017/S0953756201005317

[58]

Inderbitzin P, Shoemaker RA, O’Neill NR, Turgeon BG, Berbee ML. 2006. Systematics and mating systems of two fungal pathogens of opium poppy: the heterothallic Crivellia papaveracea with a Brachycladium penicillatum asexual state and a homothallic species with a Brachycladium papaveris asexual state. Canadian Journal of Botany 84:1304−26

doi: 10.1139/b06-067

[59]

Pryor BM, Bigelow DM. 2003. Molecular characterization of Embellisia and Nimbya species and their relationship to Alternaria, Ulocladium and Stemphylium. Mycologia 95:1141−54

doi: 10.1080/15572536.2004.11833024

[60]

Pryor BM, Creamer R, Shoemaker RA, McLain-Romero J, Hambleton S. 2009. Undifilum, a new genus for endophytic Embellisia oxytropis and parasitic Helminthosporium bornmuelleri on legumes. Botany 87:178−94

doi: 10.1139/B08-130

[61]

Wang Y, Geng Y, Ma J, Wang Q, Zhang XG. 2011. Sinomyces: a new genus of anamorphic Pleosporaceae. Fungal Biology 115:188−95

doi: 10.1016/j.funbio.2010.12.003

[62]

Gannibal PB, Lawrence DP. 2018. Distribution of Alternaria species among sections. 5. Species producing conidia with many longitudinal septa. Mycotaxon 133:285−91

doi: 10.5248/133.285

[63]

Nishikawa J, Nakashima C. 2020. Japanese species of Alternaria and their species boundaries based on host range. Fungal Systematics and Evolution 5:197−281

doi: 10.3114/fuse.2020.05.13

[64]

Nishikawa J, 2019. Integrated species recognition of the genus Alternaria. Dissertation. Mie University, Japan. pp. 160–63

[65]

Gannibal PB. 2016. Distribution of Alternaria species among sections. 2. Section Alternaria. Mycotaxon 130:941−49

doi: 10.5248/130.941

[66]

Wanasinghe DN, Phukhamsakda C, Hyde KD, Jeewon R, Lee HB, et al. 2018. Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. Fungal Diversity 89:1−236

doi: 10.1007/s13225-018-0395-7

[67]

Jayawardena RS, Purahong W, Zhang W, Wubet T, Li X, et al. 2018. Biodiversity of fungi on Vitis vinifera L. revealed by traditional and high-resolution culture-independent approaches. Fungal Diversity 90:1−84

doi: 10.1007/s13225-018-0398-4

[68]

Li JF, Phookamsak R, Jiang HB, Bhat DJ, Camporesi E, et al. 2022. Additions to the Inventory of the Genus Alternaria Section Alternaria (Pleosporaceae, Pleosporales) in Italy. Journal of Fungi 8:898

doi: 10.3390/jof8090898

[69]

Gou YN, Aung SLL, Htun AA, Huang CX, Deng JX. 2022. Alternaria species in section Alternaria associated with Iris plants in China. Frontiers in Microbiology 13:1036950

doi: 10.3389/fmicb.2022.1036950

[70]

Marin-Felix Y, Hernández-Restrepo M, Iturrieta-González I, García D, Gené J, et al. 2019. Genera of phytopathogenic fungi: GOPHY 3. Studies in Mycology 94:1−124

doi: 10.1016/j.simyco.2019.05.001

[71]

Xu B, Song J, Xi P, Li M, Hsiang T, et al. 2018. A destructive leaf spot and blight caused by Alternaria kareliniae sp. nov. on a sand-stabilizing plant, Caspian Sea Karelinia. Plant Disease 102:172−78

doi: 10.1094/PDIS-06-17-0842-RE

[72]

Index Fungorum. 2022. Alternaria kareliniae. www.indexfungorum.org/names/NamesRecord.asp?RecordID=570624 (Accessed 4 July 2022)

[73]

Link HF. 1809. Der Gesellschaft Naturforschender Freunde zu Berlin Magazin für die neuesten Entdeckungen in der gesammten Naturkunde: In der Realschulbuchhandlung. Berlin, Germany. 3(1–2):10

[74]

Gannibal PB. 2019. New species and new findings in Russia of Alternaria sect. Gypsophilae. Mikologiya i Fitopatologiya 53:10−16

doi: 10.1134/S0026364819010069

[75]

Liu JK, Hyde KD, Jones EBG, Ariyawansa HA, Bhat DJ, et al. 2015. Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species. Fungal Diversity 72:1−197

doi: 10.1007/s13225-015-0324-y

[76]

Crous PW, Wingfield MJ, Richardson DM, Leroux JJ, Strasberg D, et al. 2016. Fungal Planet description sheets: 400–468. Persoonia: Molecular Phylogeny and Evolution of Fungi 36:316−458

doi: 10.3767/003158516X692185

[77]

Gannibal PB, Lawrence DP. 2016. Distribution of Alternaria species among sections. 3. Sections Infectoriae and Pseudoalternaria. Mycotaxon 131:781−90

doi: 10.5248/131.781

[78]

Thambugala KM, Wanasinghe DN, Phillips AJL, Camporesi E, Bulgakov TS, et al. 2017. Mycosphere notes 1–50: grass (Poaceae) inhabiting Dothideomycetes. Mycosphere 8:697−796

doi: 10.5943/mycosphere/8/4/13

[79]

Iturrieta-González I, Pujol I, Iftimie S, García D, Morente V, et al. 2020. Polyphasic identification of three new species in Alternaria section Infectoriae causing human cutaneous infection. Mycoses 63:212−24

doi: 10.1111/myc.13026

[80]

Serdani M, Kang JC, Andersen B, Crous PW. 2002. Characterisation of Alternaria species-groups associated with core rot of apples in South Africa. Mycological Research 106:561−69

doi: 10.1017/S0953756202005993

[81]

Andersen B, Sørensen JL, Nielsen KF, van den Ende BG, de Hoog S. 2009. A polyphasic approach to the taxonomy of the Alternaria infectoria species–group. Fungal Genetics and Biology 46:642−56

doi: 10.1016/j.fgb.2009.05.005

[82]

Bessadat N, Hamon B, Bataille-Simoneau N, Mabrouk K, Simoneau P. 2020. Alternaria telliensis sp. nov. , a new species isolated from Solanaceae in Algeria. Phytotaxa 440:89−100

doi: 10.11646/phytotaxa.440.2.1

[83]

Gannibal PB. 2018. Distribution of Alternaria species among sections. 4. Species formerly assigned to genus Nimbya. Mycotaxon 133:37−43

doi: 10.5248/133.37

[84]

Ahmadpour A. 2019. Alternaria caricicola, a new species of Alternaria in the section Nimbya from Iran. Phytotaxa 405:65−73

doi: 10.11646/phytotaxa.405.2.1

[85]

Ahmadpour A, Ghosta Y, Poursafar A. 2021. Novel species of Alternaria section Nimbya from Iran as revealed by morphological and molecular data. Mycologia 113:1073−88

doi: 10.1080/00275514.2021.1923299

[86]

Deng JX, Li MJ, Paul NC, Lee JH, Cho HS, et al. 2015. Alternaria species associated with araliaceous plants in Korea. Mycological Progress 14:1−8

doi: 10.1007/s11557-015-1052-0

[87]

Hashemlou E, Ghosta Y, Poursafar A, Azizi R. 2020. Morphological and molecular identification of Alternaria hedjaroudei sp. nov., a new species in section Panax from Iran. Phytotaxa 438:130−40

doi: 10.11646/phytotaxa.438.2.6

[88]

Liu HF Liao J, Chen X, Liu Q, Yu Z, et al. 2019. A novel species and a new record of Alternaria isolated from two Solanaceae plants in China. Mycological Progress 18:1005−12

doi: 10.1007/s11557-019-01504-3

[89]

Cai Z, Liu Y, Shi Y, Dai L, Li L, et al. 2019. Alternaria yunnanensis sp. nov., a new Alternaria species causing foliage spot of rubber tree in China. Mycobiology 47:66−75

doi: 10.1080/12298093.2019.1575584

[90]

Poursafar A, Hashemlou E, Ghosta Y, Salimi F, Javan-Nikkhah M. 2021. Alternaria guilanica sp. nov., a new fungal pathogen causing leaf spot and blight on eggplant in Iran. Phytotaxa 520:184−94

doi: 10.11646/phytotaxa.520.2.5

[91]

Zhu XQ, Xiao CL. 2015. Phylogenetic, morphological, and pathogenic characterization of Alternaria species associated with fruit rot of blueberry in California. Phytopathology 105:1555−67

doi: 10.1094/PHYTO-05-15-0122-R

[92]

Deng JX, Li MJ, Paul NC, Oo MM, Lee HB, et al. 2018. Alternaria brassicifolii sp. nov. Isolated from Brassica rapa subsp. pekinensis in Korea. Mycobiology 46:172−76

doi: 10.1080/12298093.2018.1468054

[93]

Turland NJ, Wiersema JH, Barrie FR, Greuter W, Hawksworth DL, et al. (Eds.). 2018. International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code). Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile 159. Glashütten: Koeltz Botanical Books. https://doi.org/10.12705/code.2018

[94]

Poursafar A, Ghosta Y, Javan-Nikkhah M. 2019. Alternaria ershadii sp. nov. a new species isolated from wheat black head mold in Iran. Phytotaxa 422:175−85

doi: 10.11646/phytotaxa.422.2.4

[95]

Poursafar A, Ghosta Y, Orina AS, Gannibal PB, Javan-Nikkhah M, et al. 2018. Taxonomic study on Alternaria sections Infectoriae and Pseudoalternaria associated with black (sooty) head mold of wheat and barley in Iran. Mycological Progress 17:343−56

doi: 10.1007/s11557-017-1358-1

[96]

Gannibal PB, Lawrence DP. 2018. Distribution of Alternaria species among sections. 6. Species formerly assigned to genus Ulocladium. Mycotaxon 133:293−99

doi: 10.5248/133.293

[97]

Ferreira BW, Barreto RW. 2019. Debunking Acroconidiella. Mycological Progress 18:1303−15

doi: 10.1007/s11557-019-01525-y

[98]

Liu J, Li Y, Creamer R. 2016. A re-examination of the taxonomic status of Embellisia astragali. Current Microbiology 72:404−9

doi: 10.1007/s00284-015-0962-z

[99]

Baucom DL, Romero M, Belfon R, Creamer R. 2012. Two new species of Undifilum, fungal endophytes of Astragalus (locoweeds) in the United States. Botany 90:866−75

doi: 10.1139/b2012-056

[100]

Tsuge T, Harimoto Y, Akimitsu K, Ohtani K, Kodama M, et al. 2013. Host-selective toxins produced by the plant pathogenic fungus Alternaria alternata. FEMS Microbiology Reviews 37:44−66

doi: 10.1111/j.1574-6976.2012.00350.x

[101]

Gloer JB, Poch GK, Short DM, McCloskey DV. 1988. Structure of brassicicolin A: a novel isocyanide antibiotic from the phylloplane fungus Alternaria brassicicola. The Journal of Organic Chemistry 53:3758−61

doi: 10.1021/jo00251a017

[102]

Pedras MSC, Abdoli A. 2013. Metabolism of the phytoalexins camalexins, their bioisosteres and analogues in the plant pathogenic fungus Alternaria brassicicola. Bioorganic & Medicinal Chemistry 21:4541−49

doi: 10.1016/j.bmc.2013.05.026

[103]

Pedras MSC, Abdoli A. 2017. Biotransformation of rutabaga phytoalexins by the fungus Alternaria brassicicola: unveiling the first hybrid metabolite derived from a phytoalexin and a fungal polyketide. Bioorganic & Medicinal Chemistry 25:557−67

doi: 10.1016/j.bmc.2016.11.017

[104]

Choi YP, Paul NC, Lee HB, Yu SH. 2014. First record of Alternaria simsimi causing leaf spot on sesame (Sesamum indicum L.) in Korea. Mycobiology 42:405−8

doi: 10.5941/MYCO.2014.42.4.405

[105]

Duan C, Long Y, Chen H, Yang G, Gui M, et al. 2015. First report of Alternaria dianthicola causing flower blight on carnation in China. EPPO Bulletin 45:195−98

doi: 10.1111/epp.12200

[106]

Sadeghi B, Mirzaei S. 2018. First report of Alternaria leaf spot caused by Alternaria chlamydosporigena on tomato in Iran. Plant Disease 102:1175

doi: 10.1094/pdis-09-17-1420-pdn

[107]

Delgado Ortiz JC, Cerna Chávez E, Ochoa Fuentes YM, Beltrán Beache M. 2019. First report of Alternaria embellisia (syn. Embellisia allii) causing bulb canker or skin blotch on garlic in Mexico. Plant Disease 103:1031

doi: 10.1094/pdis-07-18-1171-pdn

[108]

Simmons EG. 1983. An aggregation of Embellisia species. Mycotaxon 17:216−41

[109]

Simmons EG. 1990. Embellisia and related teleomorphs. Mycotaxon 38:251−65

[110]

Özçınar Ö, Tağ Ö, Yusufoglu H, Kivçak B, Bedir E. 2018. Biotransformation of neoruscogenin by the endophytic fungus Alternaria eureka. Journal of Natural Products 81:1357−67

doi: 10.1021/acs.jnatprod.7b00898

[111]

Karakoyun Ç, Küçüksolak M, Bilgi E, Doğan G, Çömlekçi YE, et al. 2021. Five new cardenolides transformed from oleandrin and nerigoside by Alternaria eureka 1E1BL1 and Phaeosphaeria sp. 1E4CS-1 and their cytotoxic activities. Phytochemistry Letters 41:152−57

doi: 10.1016/j.phytol.2020.12.003

[112]

Varejão EVV, Demuner AJ, de Almeida Barbosa LC, Barreto RW. 2013. Phytotoxic effects of metabolites from Alternaria euphorbiicola against its host plant Euphorbia heterophylla. Química Nova 36:1004−7

doi: 10.1590/s0100-40422013000700014

[113]

Simmons EG. 1989. Macrospora Fuckel (Pleosporales) and related anamorphs. Sydowia 41:314−29

[114]

Tanaka M, Ohra J, Tsujino Y, Sawaji Y, Fujimori T. 1994. Phytotoxin produced by Nimbya scirpicola. Bioscience, Biotechnology, and Biochemistry 58:565−66

doi: 10.1271/bbb.58.565

[115]

Deng JX, Paul NC, Park MS, Yu SH. 2013. Molecular characterization, morphology, and pathogenicity of Alternaria panax from araliaceous plants in Korea. Mycological Progress 12:383−96

doi: 10.1007/s11557-012-0844-8

[116]

Stoessl A. 1969. Some metabolites of Alternaria solani. Canadian Journal of Chemistry 47:767−76

doi: 10.1139/v69-125

[117]

Ichihara A, Tazaki H, Sakamura S. 1983. Solanapyrones A, B and C, phytotoxic metabolites from the fungus Alternaria solani. Tetrahedron Letters 24:5373−76

doi: 10.1016/S0040-4039(00)87872-7

[118]

Müller-Stöver D, Kroschel J. 2005. The potential of Ulocladium botrytis for biological control of Orobanche spp. Biological Control 33:301−6

doi: 10.1016/j.biocontrol.2005.03.006

[119]

Taylor TN, Krings M, Taylor EL. 2015. 10 Fungal Diversity in the Fossil Record. In Systematics and Evolution, eds. McLaughlin D, Spatafora J. Heidelberg: Springer, Berlin. pp. 259–78. https://doi.org/10.1007/978-3-662-46011-5_10

[120]

Samarakoon MC, Hyde KD, Hongsanan S, McKenzie EHC, Ariyawansa HA, et al. 2019. Divergence time calibrations for ancient lineages of Ascomycota classification based on a modern review of estimations. Fungal Diversity 96:285−346

doi: 10.1007/s13225-019-00423-8

[121]

Tripathi SKM. 2009. Fungi from palaeoenvironments: Their role in environmental interpretations. In Fungi from Different Environment, eds. Misra JK, Deshmukh SK. Boca Raton: CRC Press. pp. 1–27 https://doi.org/10.1201/9780429061653

[122]

Berbee M, Le Renard L, Carmean D. 2015. Online access to the Kalgutkar and Jansonius database of fossil fungi. Palynology 39:103−9

doi: 10.1080/01916122.2014.942004

[123]

Kalgutkar RM, Sigler L. 1995. Some fossil fungal form-taxa from the Maastrichtian and Palaeogene ages. Mycological Research 99:513−22

doi: 10.1016/S0953-7562(09)80706-5

[124]

Prieto M, Wedin M. 2013. Dating the diversification of the major lineages of Ascomycota (Fungi). PLoS One 8:e65576

doi: 10.1371/journal.pone.0065576

[125]

Hongsanan S, Maharachchikumbura SSN, Hyde KD, Samarakoon MC, Jeewon R, et al. 2017. An updated phylogeny of Sordariomycetes based on phylogenetic and molecular clock evidence. Fungal Diversity 84:25−41

doi: 10.1007/s13225-017-0384-2

[126]

Hongsanan S, Sánchez-Ramírez S, Crous PW, Ariyawansa HA, Zhao RL, et al. 2016. The evolution of fungal epiphytes. Mycosphere 7:1690−712

doi: 10.5943/mycosphere/7/11/6

[127]

Samarakoon MC, Hyde KD, Promputtha I, Hongsanan S, Ariyawansa HA, et al. 2016. Evolution of Xylariomycetidae (Ascomycota: Sordariomycetes). Mycosphere 7:1746−61

doi: 10.5943/mycosphere/7/11/9

[128]

Hyde KD, Maharachchikumbura SSN, Hongsanan S, Samarakoon MC, Lücking R, et al. 2017. The ranking of fungi: a tribute to David L. Hawksworth on his 70th birthday. Fungal Diversity 84:1−23

doi: 10.1007/s13225-017-0383-3

[129]

Liu JK, Hyde KD, Jeewon R, Phillips AJL, Maharachchikumbura SSN, et al. 2017. Ranking higher taxa using divergence times: a case study in Dothideomycetes. Fungal Diversity 84:75−99

doi: 10.1007/s13225-017-0385-1

[130]

Liu NG, Hyde KD, Bhat DJ, Jumpathong J, Liu JK. 2019. Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China. Mycosphere 10:757−75

doi: 10.5943/mycosphere/10/1/17

[131]

Phukhamsakda C, Hongsanan S, Ryberg M, Ariyawansa HA, Chomnunti P, et al. 2016. The evolution of Massarineae with Longipedicellataceae fam. nov. Mycosphere 7:1713−31

doi: 10.5943/mycosphere/7/11/7

[132]

Liu NG, Lin CG, Liu JK, Samarakoon MC, Hongsanan S, et al. 2018. Lentimurisporaceae, a new Pleosporalean family with divergence times estimates. Cryptogamie Mycologie 39:259−82

doi: 10.7872/crym/v39.iss2.2018.259

[133]

Senanayake IC, Rathnayaka AR, Marasinghe DS, Calabon MS, Gentekaki E, et al. 2020. Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11:2678−754

doi: 10.5943/mycosphere/11/1/20

[134]

Jeewon R, Hyde KD. 2016. Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7:1669−77

doi: 10.5943/mycosphere/7/11/4

[135]

Jayasiri SC, Hyde KD, Ariyawansa HA, Bhat DJ, Buyck B, et al. 2015. The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74:3−18

doi: 10.1007/s13225-015-0351-8

[136]

Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, et al. 2014. The sooty moulds. Fungal Diversity 66:1−36

doi: 10.1007/s13225-014-0278-5

[137]

Dissanayake AJ, Bhunjun CS, Maharachchikumbura SSN, Liu JK. 2020. Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere 11:2652−76

doi: 10.5943/mycosphere/11/1/18

[138]

Hall TA. 1999. BioEdit: a user-friendly biologicalsequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series 41:95−98

[139]

White TJ, Bruns T, Lee SJ, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications, eds. Innis MA, Gelfand DH, Sninsky JJ, White TJ. US: Academic Press. pp. 315–22. https://doi.org/10.1016/B978-0-12-372180-8.50042-1

[140]

Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172:4238−46

doi: 10.1128/jb.172.8.4238-4246.1990

[141]

Berbee ML, Pirseyedi M, Hubbard S. 1999. Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia 91:964−77

doi: 10.1080/00275514.1999.12061106

[142]

Liu YJ, Whelen S, Hall BD. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16:1799−808

doi: 10.1093/oxfordjournals.molbev.a026092

[143]

Rehner SA. 2001. Primers for Elongation Factor 1-α (EF1-α). www2.clarku.edu/faculty/dhibbett/Protocols_Folder/Primers/Primers.pdf

[144]

Carbone I, Kohn LM. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91:553−56

doi: 10.1080/00275514.1999.12061051

[145]

Rikkinen J, Dörfelt H, Schmidt AR, Wunderlich J. 2003. Moulds from European Tertiary amber, with notes on the systematic position of Rosaria ('Cyanobacteria'). Mycological Research 107:251−56

doi: 10.1017/S0953756203007330

[146]

Beimforde C, Feldberg K, Nylinder S, Rikkinen J, Tuovila H, et al. 2014. Estimating the Phanerozoic history of the Ascomycota lineages: combining fossil and molecular data. Molecular Phylogenetics and Evolution 78:386−98

doi: 10.1016/j.ympev.2014.04.024

[147]

Pérez-Ortega S, Garrido-Benavent I, Grube M, Olmo R, de los Ríos A. 2016. Hidden diversity of marine borderline lichens and a new order of fungi: Collemopsidiales (Dothideomyceta). Fungal Diversity 80:285−300

doi: 10.1007/s13225-016-0361-1

[148]

Mindell RA, Stockey RA, Beard G, Currah RS. 2007. Margaretbarromyces dictyosporus gen. sp. nov. : a permineralized corticolous ascomycete from the Eocene of Vancouver Island, British Columbia. Mycology Research 111:680−84

doi: 10.1016/j.mycres.2007.03.010

[149]

Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29:1969−73

doi: 10.1093/molbev/mss075

[150]

Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9:772

doi: 10.1038/nmeth.2109

[151]

Rambaut A, Suchard M, Xie W, Drummond A. 2014. Tracer v. 1.6. Institute of Evolutionary Biology, University of Edinburgh, UK.

[152]

Rambaut A. 2012. FigTree. Tree figure drawing tool version 1.4. 0. Institute of Evolutionary Biology, University of Edinburgh, UK.

[153]

Katoh K, Rozewicki J, Yamada KD. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in bioinformatics 20:1160−66

doi: 10.1093/bib/bbx108

[154]

Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57:758−71

doi: 10.1080/10635150802429642

[155]

Silvestro D, Michalak I. 2012. raxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution 12:335−37

doi: 10.1007/s13127-011-0056-0

[156]

Nylander JAA. 2004. MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Sweden.

[157]

Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572−74

doi: 10.1093/bioinformatics/btg180

[158]

Rannala B, Yang Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43:304−11

doi: 10.1007/BF02338839

[159]

Zhaxybayeva O, Gogarten JP. 2002. Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3:4

doi: 10.1186/1471-2164-3-4

[160]

Simmons EG. 1995. Alternaria themes and variations (112–144). Mycotaxon 55:55−163

[161]

Simmons EG. 1967. Typification of Alternaria, Stemphylium and Ulocladium. Mycologia 59:67−92

doi: 10.1080/00275514.1967.12018396

[162]

Pryor BM, Michailides TJ. 2002. Morphological, pathogenic, and molecular characterization of Alternaria isolates associated with Alternaria late blight of pistachio. Phytopathology 92:406−16

doi: 10.1094/PHYTO.2002.92.4.406

[163]

Somma S, Amatulli MT, Masiello M, Moretti A, Logrieco AF. 2019. Alternaria species associated to wheat black point identified through a multilocus sequence approach. International Journal of Food Microbiology 293:34−43

doi: 10.1016/j.ijfoodmicro.2019.01.001

[164]

Simmons EG. 1996. Alternaria themes and variations (145–149). Mycotaxon 57:391−409

[165]

Simmons EG. 2002. Alternaria themes and variations (287–304). Species on Caryophyllaceae. Mycotaxon 82:1−40

[166]

Jeewon R, Liew ECY, Hyde KD. 2004. Phylogenetic evaluation of species nomenclature of Pestalotiopsis in relation to host association. Fungal Diversity 17:39−55

[167]

Chethana KWT, Jayawardene RS, Zhang W, Zhou YY, Liu M, et al. 2019. Molecular characterization and pathogenicity of fungal taxa associated with cherry leaf spot disease. Mycosphere 10:490−530

doi: 10.5943/mycosphere/10/1/8

[168]

Tao YQ, Jia GG, Aung SLL, Wu QL, Lu HX, et al. 2019. Multigene phylogeny and morphology of Alternaria reveal a novel species and a new record in China. Phytotaxa 397:169−76

doi: 10.11646/phytotaxa.397.2.4

[169]

Zhang SN, Hyde KD, Jones EBG, Jeewon R, Cheewangkoon R, et al. 2019. Striatiguttulaceae, a new pleosporalean family to accommodate Longicorpus and Striatiguttula gen. nov. from palms. MycoKeys 49:99−129

doi: 10.3897/mycokeys.49.30886

[170]

Zhao RL, Zhou JL, Chen J, Margaritescu S, Sánchez-Ramírez S, et al. 2016. Towards standardizing taxonomic ranks using divergence times-a case study for reconstruction of the Agaricus taxonomic system. Fungal Diversity 78:239−92

doi: 10.1007/s13225-016-0357-x