| [1] |
Li MY, Hou XL, Wang F, Tan GF, Xu ZS, et al. 2018. Advances in the research of celery, an important Apiaceae vegetable crop. |
| [2] |
Li MY, Feng K, Hou XL, Jiang Q, Xu ZS, et al. 2020. The genome sequence of celery (Apium graveolens L.), an important leaf vegetable crop rich in apigenin in the Apiaceae family. |
| [3] |
Wang Y, Chen X, Li X, Song Y, Wang J, et al. 2021. Exogenous application of 5-aminolevulinic acid alleviated damage to wheat chloroplast ultrastructure under drought stress by transcriptionally regulating genes correlated with photosynthesis and chlorophyll biosynthesis. |
| [4] |
Wang T, Liu S, Tian S, Ma T, Wang W. 2022. Light regulates chlorophyll biosynthesis via ELIP1 during the storage of Chinese cabbage. |
| [5] |
Wang C, Ma W, Xu L, Wei Z, Tang K, et al. 2024. Integrative metabolic and cellular organelle engineering for improving biosynthesis of flavonoid compounds in saccharomyces cerevisiae. |
| [6] |
An Z, Yang Z, Zhou Y, Huo S, Zhang S, et al. 2024. OsJRL negatively regulates rice cold tolerance via interfering phenylalanine metabolism and flavonoid biosynthesis. |
| [7] |
Vale AP, Santos J, Brito NV, Peixoto V, Carvalho R, et al. 2015. Light influence in the nutritional composition of Brassica oleracea sprouts. |
| [8] |
Adjei MO, Zhou X, Xue Y, Mao M, Zhang H, et al. 2022. Comparative chlorophyll metabolic genes expression and response to dark stress of Ananas comosus var. bracteatus. |
| [9] |
Liang M, Gu D, Lie Z, Yang Y, Lu L, et al. 2023. Regulation of chlorophyll biosynthesis by light-dependent acetylation of NADPH: protochlorophyll oxidoreductase A in Arabidopsis. |
| [10] |
Qin Y, Liu X, Li C, Chu Q, Cheng S, et al. 2024. Effect of light intensity on celery growth and flavonoid synthesis. |
| [11] |
Khan M, Taufiq S, Nauman I, Noor N, Iqbal T, et al. 2022. Photoperiod and water-deficient conditions differentially regulate structural flavonoid biosynthetic genes in peanuts. |
| [12] |
Fadda A, Virdis A, Barberis A, Ledda L, Melito S. 2020. Phenolic compounds, antioxidant activity and lignin content of 'Spinoso sardo' globe artichoke grown under different photoperiods. |
| [13] |
Huang T, Liu H, Tao JP, Zhang JQ, Zhao TM, et al. 2023. Low light intensity elongates period and defers peak time of photosynthesis: a computational approach to circadian-clock-controlled photosynthesis in tomato. |
| [14] |
Sharma M, Irfan M, Kumar A, Kumar P, Datta A. 2022. Recent insights into plant circadian clock response against abiotic stress. |
| [15] |
Ren Y, Gao Y, Zhang Q. 2021. Morning and evening alarm of the circadian clock for flower opening times in Hemerocallis. |
| [16] |
Ohno M, Yamawo A. 2021. Night interruption provides evidence for photoperiodic regulation of bud burst in Japanese beech, Fagus crenata. |
| [17] |
Li M, Tan S, Tan G, Luo Y, Sun B, et al. 2020. Transcriptome analysis reveals important transcription factor families and reproductive biological processes of flower development in celery (Apium graveolens L.). |
| [18] |
Melloni MGL, Melloni MGN, Scarpari MS, Garcia JC, Landell MGA, et al. 2015. Flowering of sugarcane genotypes under different artificial photoperiod conditions. |
| [19] |
Wang ZH, Liu X, Cui Y, Wang YH, Lv ZL, et al. 2024. Genomic, transcriptomic, and metabolomic analyses provide insights into the evolution and development of a medicinal plant Saposhnikovia divaricata (Apiaceae). |
| [20] |
Chen S, Zhou Y, Chen Y, Gu J. 2018. Fastp: an ultra-fast all-in-one FASTQ preprocessor. |
| [21] |
Davis EM, Sun Y, Liu Y, Kolekar P, Shao Y, et al. 2021. SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data. |
| [22] |
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, et al. 2013. STAR: ultrafast universal RNA-seq aligner. |
| [23] |
Li B, Dewey CN. 2011. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. |
| [24] |
Liao Y, Smyth GK, Shi W. 2013. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. |
| [25] |
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. 2000. Gene Ontology: tool for the unification of biology. |
| [26] |
Yu G, Wang LG, Han Y, He QY. 2012. clusterProfiler: an R package for comparing biological themes among gene clusters. |
| [27] |
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. 2004. The KEGG resource for deciphering the genome. |
| [28] |
Wang H, Liu JX, Feng K, Li T, Duan AQ, et al. 2022. AgMYB12, a novel R2R3-MYB transcription factor, regulates apigenin biosynthesis by interacting with the AgFNS gene in celery. |
| [29] |
Schäffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, et al. 2001. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. |
| [30] |
Deng YY, Li JQ, Wu SF, Zhu YP, Chen YW, et al. 2006. Integrated nr database in protein annotation system and its localization. Computer Engineering 32:71−73,76 |
| [31] |
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, et al. 2014. Pfam: the protein families database. |
| [32] |
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, et al. 2004. UniProt: the universal protein knowledgebase. |
| [33] |
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al. 2003. The COG database: an updated version includes eukaryotes. |
| [34] |
Fang J, Shugart HH, Wang L, Lutz JA, Yan X, et al. 2024. Optimal representation of spring phenology on photosynthetic productivity across the Northern Hemisphere forests. |
| [35] |
Yudina L, Sukhova E, Gromova E, Mudrilov M, Zolin Y, et al. 2023. Effect of duration of LED lighting on growth, photosynthesis and respiration in lettuce. |
| [36] |
Ren H, Zhu F, Zheng C, Sun X, Wang W, et al. 2013. Transcriptome analysis reveals genes related to floral development in chrysanthemum responsive to photoperiods. |
| [37] |
Mu W, Wu X, Camarero JJ, Fu YH, Huang J, et al. 2023. Photoperiod drives cessation of wood formation in northern conifers. |
| [38] |
Sønsteby A, Heide OM. 2021. Dynamics of dormancy regulation in 'Sonata' strawberry and its relation to flowering and runnering. |
| [39] |
Kumar A, Singh N, Kaur A, Joshi R. 2023. Sneak-peek into the chlorophyll content, antioxidant activity, targeted and non-targeted UHPLC-QTOF LC/MS metabolomic fingerprints of pulse microgreens grown under different photoperiod regimes. |
| [40] |
Terekhova VI, Bocharova MA, Yembaturova EY. 2022. The influence of supplementary lighting sources on agro-biological performance in greenhouse-grown cucumbers. |
| [41] |
Wang F, Han T, Chen ZJ. 2024. Circadian and photoperiodic regulation of the vegetative to reproductive transition in plants. |
| [42] |
Lange M, Schaber J, Marx A, Jäckel G, Badeck FW, et al. 2016. Simulation of forest tree species' bud burst dates for different climate scenarios: chilling requirements and photo-period may limit bud burst advancement. |
| [43] |
Elmardy NA, Yousef AF, Lin K, Zhang X, Ali MM, et al. 2021. Photosynthetic performance of rocket (Eruca sativa Mill.) grown under different regimes of light intensity, quality, and photoperiod. |
| [44] |
Li Y, Lu Y, Zhou Y, Wei X, Peng Y, et al. 2021. Diurnal transcriptomics analysis reveals the regulatory role of the circadian rhythm in super-hybrid rice LY2186. |
| [45] |
Hu ZH, Zhang N, Qin ZY, Li JW, Tao JP, et al. 2024. Circadian rhythm response and its effect on photosynthetic characteristics of the Lhcb family genes in tea plant. |
| [46] |
Hsu YP, Harmer LS. 2014. Wheels within wheels: the plant circadian system. |
| [47] |
Zhu Y, Narsai R, He C, Wang Y, Berkowitz O, et al. 2023. Coordinated regulation of the mitochondrial retrograde response by circadian clock regulators and ANAC017. |
| [48] |
Müller LM, Mombaerts L, Pankin A, Davis SJ, Webb AAR, et al. 2020. Differential effects of day/night cues and the circadian clock on the barley transcriptome. |
| [49] |
Hussain Q, Zheng M, Hänninen H, Bhalerao RP, Riaz MW, et al. 2022. Effect of the photoperiod on bud dormancy in Liriodendron chinense. |
| [50] |
Hildreth SB, Littleton ES, Clark LC, Puller GC, Kojima S, et al. 2022. Mutations that alter Arabidopsis flavonoid metabolism affect the circadian clock. |
| [51] |
Dong MX, Zhang W, Tu ML, Zhang SB. 2025. Spatial and temporal regulation of flower coloration in Cymbidium lowianum. |
| [52] |
Li M, Wang W, Wang Y, Guo L, Liu Y, et al. 2024. Duplicated chalcone synthase (CHS) genes modulate flavonoid production in tea plants in response to light stress. |
| [53] |
Li L, Jiang G, Li H, Liu J, Zhang P, et al. 2024. UV-B induced flavonoid accumulation and related gene expression in blue- grained wheat at different periods of time. |
| [54] |
Righini S, Rodriguez EJ, Berosich C, Grotewold E, Casati P, et al. 2019. Apigenin produced by maize flavone synthase I and II protects plants against UV-B-induced damage. |
| [55] |
Bhattacharya A, Khanale V, Char B. 2017. Plant circadian rhythm in stress signaling. |
| [56] |
Fan W, He Z, Zhe M, Feng J, Zhang L, et al. 2023. High-quality Cymbidium mannii genome and multifaceted regulation of crassulacean acid metabolism in epiphytes. |
| [57] |
Scialdone A, Mugford ST, Feike D, Skeffington A, Borrill P, et al. 2013. Arabidopsis plants perform arithmetic division to prevent starvation at night. |
| [58] |
Lahari Z, van Boerdonk S, Omoboye OO, Reichelt M, Höfte M, et al. 2023. Strigolactone deficiency induces jasmonate, sugar and flavonoid phytoalexin accumulation enhancing rice defense against the blast fungus Pyricularia oryzae. |