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Soil samples were collected aseptically from Drass valley by scraping the superficial layer, not exceeding 3-5 cm in depth, with the help of properly sterilized spatula and were brought to the laboratory in pre-sterilised polythene bags. For isolation, dilution pour plate method was adopted using modified Czapek Dox agar (CDA) supplemented with streptomycin sulphate (50 mg/1000 ml) and Rose Bengal (0.1 mg/100 ml). The cultures were deposited in the departmental fungal repository. Facesoffungi numbers were obtained as mentioned by Jayasiri et al. (2015).
Cultural and microscopic observations
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Colony diameter were measured using a measuring scale (15 cm) in mm and cultural characteristics, such as, colony texture, colour, exudates, colour of exudates and soluble pigments were observed. Microscopic preparations were made in lactophenol cotton blue (LCB) whereas microscopic line drawings were made with the help of camera lucida at 400x and 1000x magnifications. Dimensions were determined for stipe, metulae, phialides and conidia with the help of an ocular micrometer (Erma, Japan). Microphotography of the fungal cultures was done using Sony N50 camera attached to an Olympus CH 20i binocular microscope. The recovered fungal isolates were identified by studying their cultural and morphological characters. For the purpose of identification, the recovered fungal species were grown and made to sporulate on different culture media, particularly Czapek yeast agar (CYA) and malt extract agar (MEA) media. The recovered species of Penicillium were identified by following the taxonomic key given by Pitt (1979) and other relevant literature.
Percentage colonization frequency (CF%), A/F ratios and colony forming units (CFU) of the recovered fungal species
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Percentage colonization frequency (CF %), A/F ratio, abundance and cfu/g were calculated for each fungal species using formulae given in Table 1.
Table 1. Formulae used
$\mathrm{CF}(\%)=\frac{\text { Number } \quad \text { of soil samples colonized by a specific fungus }}{\text { Total number of samples studied }} \mathrm{x} 100$ A/F ratio = Abundance/Colonization frequency Where: abundance = $\frac{{{\rm{\; number\; of\; colonies\; of\; a\; specific\; fungus}}}}{{{\rm{Number\; of\; soil\; samples\; colonized\; by\; a\; specific fungus}}}}$ A/F ratios describe the distribution pattern of each fungal species into one of the following three categories: A/F ratio of < 0.025 depicts that the fungal species has regular distribution A/F ratio between 0.025 - 0.05 depicts that fungal species has random distribution A/F ratio of > 0.05 depicts that the fungal species has contagious distribution $\mathrm{c} \mathrm{FU} / \mathrm{g}=\mathrm{a} \times \mathrm{d} / \mathrm{s}$ Where: a = average number of colonies on the petriplate; d = dilution factor (10, 000), s = dry weight of the soil sample
Sampling and isolation
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Among the various psychrotrophic microfungal species that were recovered from the sampled soils, Penicillium was represented by maximum number of species (13) viz., P. adametzi, P. bilaiae, P. citrinum, P. herquei, P. implicatum, P. italicum, P. miczynskii, P. resedanum, P. restrictum, P. roseopurpureum, P. sclerotiorum, P. verrucosum and P. vinaceum (Table 2). These results are in accordance with that of Sonjak et al. (2006) who reported high occurrence and dominance of Penicillium species from three different polythermal Arctic glaciers. Being often psychrotolerant and sturdy, in combination with having the ability to produce abundant number of conidia, penicillia are among the few viable fungi that have been isolated from glacial ice cores (Abyzov 1993). Several similar studies have revealed high frequency of Penicillium species from dry, saline or polar habitats, such as, Arctic and Antarctic soils, permafrost, sea ice, snow and sea water (Vishniac 1993, McRae et al. 1999, Gunde-Cimerman et al. 2003, Ivanushkina et al. 2005, Frisvad et al. 2006). Genus Penicillium encompasses mostly those species, which show tolerance in cold environments as demonstrated by the fact that they can grow on food preserved in refrigerators (Pitt & Hocking 1999) and have been isolated from alpine, tundra (Domsch et al. 1980) and polar soils (McRae et al. 1999, Frisvad 2004). Recently, the dominance of Penicillium species in glacial ice with diverse bioactive potential has been well documented from Antarctica (De Menezes et al. 2020). In addition to cold tolerance, Dhakar et al. (2014) reported the ability of 25 Penicillium species inhabiting the high-altitude soils of the Indian Himalayan region to tolerate extremes of cold temperature, pH and salt indicating their adaptive capabilities and flexibilities.
Table 2. Penicillium species recovered from the soil samples of Drass valley
Penicilliumspecies Type of penicilli Number of soil samples analysed = 25 Number of samples recovered detected positive CF (%) Abundance A/F ratio cfu/g Penicillium adametzi Monoverticillate 14 56 1.14 0.020 1.6 × 103 P. bilaiae Monoverticillate 4 16 1.50 0.093 0.6 × 103 P. citrinum Monoverticillate 8 32 1.50 0.046 1.2 × 103 P. herquei Biverticillate 12 48 1.91 0.039 2.3 × 103 P. implicatum Monoverticillate 3 12 1.66 0.138 0.5 × 103 P. italicum Terverticillate 5 20 1.00 0.050 0.5 × 103 P. miczynskii Biverticillate 7 28 1.14 0.040 0.8 × 103 P. restrictum Monoverticillate 9 36 1.55 0.043 1.4 × 103 P. resendanum Monoverticillate 8 32 1.37 0.042 1.1 × 103 P. sclerotiorum Monoverticillate 12 48 1.16 0.024 1.4 × 103 P. roseopurpureum Monoverticillate 14 56 1.14 0.020 1.6 × 103 P. vinaceum Monoverticillate 15 60 2.06 0.034 3.1 × 103 P. verrucosum Terverticillate 3 12 2.00 0.166 0.6 × 103 Out of the diverse species of Penicillium that were recovered during the present investigation, P. adametzi, P. herquei P. implicatum, P. italicum, P. restrictum, and P. roseopurpureum and P. vinaceum have been reported from hot arid and semi-arid soils (Grishkan et al. 2003, Oliveira et al. 2013). Representatives of cold habitats are exemplified by penicilli, such as, P. citrinum, P. implicatum and P. miczynskii, P. restrictum and P. verrucosum, which have been reported from permafrost sediments of Arctic and Antarctic regions (Ivanushkina et al. 2005, Kochkina et al. 2012). However, there are no reports on the occurrence of P. bilaiae, P. resedanum and P. sclerotiorum from the hot or cold desert soils and thus constitute new additions to the existing list of desert mycoflora.
Perusal of data presented in Table 2 shows that Penicillium adametzi, P. roseopurpureum and P. sclerotiorum have regular distribution with A/F ratios < 0.0250. On the other hand, P. citrinum, P. herquei, P. italicum, P. miczynskii, P. resendanum, P. restrictum, and P. vinaceum were randomly distributed whereas rest of the species were contageously distributed with A/F ratios > 0.05.
During the present investigation, most of the Penicillium species recovered from the soil of Drass valley were observed to have monoverticillate penicilli in contrast to the bi or ter-verticillate Penicillium species (Table 2). Many mycological studies from the cold regions of the globe have shown the occurrence of monoverticillate penicilli along with the Penicillium species with other branching types (Godinho et al. 2013, Dhakar et al. 2014, Pandey et al. 2016, De Menezes et al. 2020). Data also shows that most of these monoverticillate penicilli displayed maximum percentage colonization frequency (CF %) with P. vinaceum (60) closely followed by P. adametzi (56) and P. roseopurpureum (56). Similarly, highest colony forming units (cfu) were recorded for P. vinaceum (3.1 × 103), whereas least were that for P. implicatum and P. italicum (0.5 × 103) each (Table 2).
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Ladakh region represents an unexplored region in India in terms of microbiological studies. It caught the attention of researchers in the recent years with the discovery of many novel microbes from similar habitats. In the present study we observed the dominance of Penicillium taxa which are known to withstand cold temperatures. Drass valley, being the coldest place in the Himalayan region, the microbes apparently remain less active and dormant for most part of the year and since penicilli have been considered as one of the cold tolerant fungi, their probability of incidence from such extreme environments augments with decrease in temperature to zero to sub-zero temperatures. Through this study it is felt that these monoverticillate microfungal species have adapted and evolved over the years with their high frequency and dominance which could be attributed to their diverse survival capabilities and strategies. Preferential formation of simplest reproductive structures that can be produced at low metabolic costs could be one such strategy.
S Nonzom, G Sumbali. 2021. Dominance of monoverticillate penicilli in the cold arid soils of Drass valley, India. Studies in Fungi 6(1):378−390 doi: 10.5943/sif/6/1/28 |