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Agronomic traits of seven accessions of Cenchrus purpureus under rainfed conditions in the tropical region of Veracruz, México

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  • Received: 02 July 2024
    Revised: 30 October 2024
    Accepted: 01 November 2024
    Published online: 28 November 2024
    Grass Research  4 Article number: e023 (2024)  |  Cite this article
  • The purpose of this study was to determine the agronomic characteristics and yield of seven Cenchrus purpureus accessions (Taiwan grass, King grass, Elephant grass, Merkeron, CT-115, Purple grass, and Maralfalfa) to identify the best options to use as fodder resources in the Huasteca Alta Veracruzana (HAV) ruminant production units. The research was conducted at the Instituto Tecnologico Superior de Tantoyuca in 2019 and 2020, under rainfed conditions. Sowing density was established at 36 tillers per 25 m2, with a spacing between rows of 0.8 m and 0.8 m between plants. Fresh weight, dry matter, daily rates of dry matter accumulation in leaves, leaf/stem ratio, height, and harvest frequency were assessed. Rainfall amount, temperature, relative humidity, and global radiation levels were recorded to assess their effect on the evaluated variables. The one-way analysis of variance and multivariate analysis techniques were used, such as multiple linear regression and clustering analysis with Statistica V10 software. There were no statistical differences between the fresh weight of different accessions in the rainy season. On the other hand, CT-115 presented a higher dry matter content than Merkeron or Elephant grass (p < 0.05). The correlation analysis showed a high association between dry matter and daily rates of dry matter accumulation in leaves. The results varied due to weather phenomena and C. purpureus genetic variability. Quality parameters must be evaluated to identify the accessions with the best nutritional values and their effect on animal performance.
  • The Fabaceae family, the third largest family in angiosperms, contains about 24,480 species (WFO, https://wfoplantlist.org), and has been a historically important source of food crops[14]. Peas (formerly Pisum sativa L. renamed to Lathyrus oleraceusPisum spp. will be used hereafter due to historical references to varietal names and subspecies that may not have been fully synonymized), are a member of the Fabaceae family and is among one of the oldest domesticated food crops with ongoing importance in feeding humans and stock. Peas originated in Western Asia and the Mediterranean basin where early finds from Egypt have been dated to ~4500 BCE and further east in Afghanistan from ~2000 BCE[5], and have since been extensively cultivated worldwide[6,7]. Given that peas are rich in protein, dietary fiber, vitamins, and minerals, have become an important part of people's diets globally[810].

    Domesticated peas are the result of long-term human selection and cultivation, and in comparison to wild peas, domesticated peas have undergone significant changes in morphology, growth habits, and yield[1113]. From the long period of domestication starting in and around Mesopotamia many diverse lineages of peas have been cultivated and translocated to other parts of the world[14,15]. The subspecies, Pisum sativum subsp. sativum is the lineage from which most cultivars have been selected and is known for possessing large, round, or oval-shaped seeds[16,17]. In contrast, the subspecies, P. sativum subsp. elatius, is a cultivated pea which more closely resembles wild peas and is mainly found in grasslands and desert areas in Europe, Western Asia, and North Africa. Pisum fulvum is native to the Mediterranean basin and the Balkan Peninsula[15,18], and is resistant to pea rust caused by the fungal pathogen Uromyces pisi. Due to its resistance to pea rust, P. fulvum has been cross-bred with cultivated peas in the development of disease-resistant strains[19]. These examples demonstrate the diverse history of the domesticated pea and why further study of the pea pan-plastome could be employed for crop improvement. While studies based on the nuclear genome have been used to explore the domestication history of pea, these approaches do not account for certain factors, such as maternal inheritance. Maternal lineages, which are inherited through plastomes, play a critical role in understanding the full domestication process. A pan-plastome-based approach will no doubt allow us to investigate the maternal genetic contributions and explore evolutionary patterns that nuclear genome studies may overlook. Besides, pan-plastome analysis enables researchers to systematically compare plastome diversity across wild and cultivated species, identifying specific regions of the plastome that contribute to desirable traits. These plastid traits can then be transferred to cultivated crops through introgression breeding or genetic engineering, leading to varieties with improved resistance to disease, environmental stress, and enhanced agricultural performance.

    Plastids are organelles present in plant cells and are the sites in which several vital biological processes take place, such as photosynthesis in chloroplasts[2024]. Because the origin of plastids is the result of an ancient endosymbiotic event, extant plastids retain a genome (albeit much reduced) from the free-living ancestor[25]. With the advancement of high-throughput DNA sequencing technology, over 13,000 plastid genomes or plastomes have been published in public databases by the autumn of 2023[24]. Large-scale comparison of plastomic data at multiple taxonomic levels has shown that plastomic data can provide valuable insights into evolution, interspecies relationships, and population genetic structure. The plastome, in most cases, displays a conserved quadripartite circular genomic architecture with two inverted repeat (IR) regions and two single copy (SC) regions, referred to as the large single-copy (LSC) and small single-copy (SSC) regions. However, some species have lost one copy of the inverted repeated regions, such as those in Erodium (Geraniaceae family)[26,27] and Medicago (Fabaceae)[28,29]. Compared to previous plastomic studies based on a limited number of plastomes, the construction of pan-plastomes attempts to describe all nucleotide variants present in a lineage through intensive sampling and comparisons. Such datasets can provide detailed insights into the maternal history of a species and help to better understand applied aspects such as domestication history or asymmetries in maternal inheritance, which can help guide future breeding programs. Such pan-plastomes have recently been constructed for several agriculturally important species. A recent study focuses on the genus Gossypium[20], using plastome data at the population level to construct a robust map of plastome variation. It explored plastome diversity and population structure relationships within the genus while uncovering genetic variations and potential molecular marker loci in the plastome. Besides, 65 samples were combined to build the pan-plastome of Hemerocallis citrina[30] , and 322 samples for the Prunus mume pan-plastome[31]. Before these recent efforts, similar pan-plastomes were also completed for Beta vulgaris[32], and Nelumbo nucifera[33]. However, despite the agricultural importance of peas, no such pan-plastome has been completed.

    In this study, 103 complete pea plastomes were assembled and combined another 42 published plastomes to construct the pan-plastome. Using these data, the following analyses were conducted to better understand the evolution and domestication history of pea: (1) genome structural comparisons, (2) codon usage bias, (3) simple sequence repeat patterns, (4) phylogenetic analysis, and (5) nucleotide variation of plastomes in peas.

    One hundred and three complete pea plastomes were de novo assembled from public whole-genome sequencing data[34]. For data quality control, FastQC v0.11.5 (www.bioinformatics.babraham.ac.uk/projects/fastqc/) was utilized to assess the quality of the reads and ensure that the data was suitable for assembly. The clean reads were then mapped to a published pea plastome (MW308610) plastome from the GenBank database (www.ncbi.nlm.nih.gov/genbank) as the reference using BWA v0.7.17[35] and SAMtools v1.9[36] to isolate plastome-specific reads from the resequencing data. Finally, these plastome-specific reads were assembled de novo using SPAdes v3.15.2[37]. The genome annotation was conducted by Geseq online program (https://chlorobox.mpimp-golm.mpg.de/geseq.html). Finally, the OGDRAW v1.3.1[38] program was utilized to visualize the circular plastome maps with default settings. To better resolve the pan-plastome for peas, 42 complete published pea plastomes were also downloaded from NCBI and combined them with the de novo data (Supplementary Table S1).

    To investigate the codon usage in the pan-plastome of pea, we utilized CodonW v.1.4.2 (http://codonw.sourceforge.net) to calculate the Relative Synonymous Codon Usage (RSCU) value of the protein-coding genes (PCGs) longer than 300 bp, excluding stop codons. The RSCU is a calculated metric used to evaluate the relative frequency of usage among synonymous codons encoding the same amino acid. An RSCU value above 1 suggests that the codon is utilized more frequently than the average for a synonymous codon. Conversely, a value below 1 indicates a lower-than-average usage frequency. Besides, the Effective Number of Codons (ENC) and the G + C content at the third position of synonymous codons (GC3s) were also calculated in CodonW v.1.4.2. The ENC value and GC3s value were utilized for generating the ENC-GC3s plot, with the expected ENC values (standard curve), are calculated according to formula: ENC = 2 + GC3s + 29 / [GC3s2 + (1 – GC3s)2][39].

    The MISA program[40] was utilized to detect simple sequence repeats (SSRs), setting the minimum threshold for repeat units at 10 for mono-motifs, 6 for di-motifs, and 5 for tri-, tetra-, penta-, and hexa-motif microsatellites, respectively.

    The 145 complete pea plastomes were aligned using MAFFT v 7.487[41]. Single nucleotide variants (SNVs)-sites were used to derive an SNV only dataset from the entire-plastome alignment[42]. A total of 959 SNVs were analyzed using IQ-TREE v2.1[43] with a TVMe + ASC + R2 substitution model, determined by ModelTest-NG[44] based on BIC, and clade support was assessed with 1,000 bootstrap replicates. Vavilovia formosa (MK604478) was chosen as an outgroup. The principal coordinates analysis (PCA) was conducted in TASSEL 5.0[45].

    DnaSP v6[46] was utilized to identify different haplotypes among the plastomes, with gaps and missing data excluded. Haplotype networks were constructed in Popart v1.7[47] using the median-joining algorithm. Haplotype diversity (Hd) for each group was calculated by DnaSP v6[46], and the evolutionary distances based on the Tamura-Nei distance model were computed based on the population differentiation index (FST) between different groups with the plastomic SNVs.

    In this study, the pan-plastome structure of peas was elucidated (Fig. 1). The length of these plastomes ranged from 120,826 to 122,547 bp. And the overall GC content varied from 34.74% to 34.87%. In contrast to typical plastomes characterized by a tetrad structure, the plastomes of peas contained a single IR copy. The average GC content among all pea plastomes was 34.8%, with the highest amount being 34.84% and the lowest 34.74%, with minimal variation among the pea plastomes.

    Figure 1.  Pea pan-plastome annotation map. Indicated by arrows, genes listed inside and outside the circle are transcribed clockwise and counterclockwise, respectively. Genes are color-coded by their functional classification. The GC content is displayed as black bars in the second inner circle. SNVs, InDels, block substitutions and mixed variants are represented with purple, green, red, and black lines, respectively. Single nucleotide variants (SNVs), block substitutions (BS, two or more consecutive nucleotide variants), nucleotide insertions or deletions (InDels), and mixed sites (which comprise two or more of the preceding three variants at a particular site) are the four categories into which variants are divided.

    A total of 110 unique genes were annotated (Supplementary Table S2), of which 76 genes were PCGs, 30 were transfer RNA (tRNA) genes and four were ribosomal RNA (rRNA) genes. Genes containing a single intron, include nine protein-coding genes (rpl16, rpl2, ndhB, ndhA, petB, petD, rpoC1, clpP, atpF) and six tRNA genes (trnK-UUU, trnV-UAC, trnL-UAA, trnA-UGC, trnI-GAU, trnG-UCC). Additionally, two protein-coding genes ycf3 and rps12 were found to contain two introns.

    The codon usage frequency in pea plastome genes is shown in Fig. 2a. The analysis of codon usage in the pea plastome indicated significant biases for specific codons across various amino acids. Here a nearly average usage in some amino acids was observed, such as Alanine (Ala) and Valine (Val). For most amino acids, the usage of different synonymous codons was not evenly distributed. Regarding stop codons, a nearly even usage was found, with 37.0% for TAA, 32.2% for TAG and 30.8% for TGA.

    Figure 2.  (a) The overall codon usage frequency in 51 CDSs (length > 300 bp) from the pea pan-plastome. (b) The heatmap of RSCU values in 51 CDSs (length > 300 bp) from the pea pan-plastome. The x-axis represents different codons and the y-axis represents different CDSs. The tree at the top was constructed based on a Neighbor-Joining algorithm.

    The RSCU heatmap (Fig. 2b) showed different RSCU values for all codons in plastomic CDSs. In general, a usage bias for A/T in the third position of codons was found among CDSs in the pea pan-plastome. The RSCU values among these CDSs ranged from 0 to 4.8. The highest RSCU value (4.8) was found with the CGT codon in the cemA gene, where six synonymous codons exist for Arg but only CGT (4.8) and AGG (1.2) were used in this gene. This explained in large part the extreme RSCU value for CGT, resulting in an extreme codon usage bias in this amino acid.

    In the ENC-GC3s plot (Fig. 3), 31 PCGs were shown below the standard curve, while 20 PCGs were above. Besides, around 12 PCGs were near the curve, which meant these PCGs were under the average natural selection and mutation pressure. This plot displayed that the codon usage preferences in pea pan-plastomes were mostly influenced by natural selection. Five genes were shown an extreme influence with natural selection for its extreme ΔENC (ENCexpected – ENC) higher than 5, regarding as petB (ΔENC = 5.18), psbA (ΔENC = 8.96), rpl16 (ΔENC = 5.62), rps14 (ΔENC = 14.29), rps18 (ΔENC = 6.46) (Supplementary Table S3).

    Figure 3.  The ENC-GC3s plot for pea pan-plastome, with GC3s as the x-axis and ENC as the y-axis. The expected ENC values (standard curve) are calculated according to formula: ENC = 2 + GC3s + 29 / [GC3s2 + (1 − GC3s)2].

    For SSR detection (Fig. 4), mononucleotide, dinucleotide, and trinucleotide repeats were identified in the pea pan-plastome including A/T, AT/TA, and AAT/ATT. The majority of these SSRs were mononucleotides (A/T), accounting for over 90% of all identified repeats. Additionally, we observed that A/T and AT/TA repeats were present in all pea accessions, whereas only about half of the plastomes contained AAT/ATT repeats. It was also found that the number of A/T repeats exhibited the greatest diversity, while the number of AAT/ATT repeats showed convergence in all plastomes that possessed this repeat.

    Figure 4.  Simple sequence repeats (SSRs) in the pea pan-plastome. The x-axis represents different samples of pea and the y-axis represents the number of repeats in this sample. (a) The number of A/T repeats in the peapan-plastome. (b) The number of AT/TA and AAT/ATT repeats of pea pan-plastomes.

    To better understand the phylogenetic relationships and evolutionary history of peas, a phylogenetic tree was reconstructed using maximum likelihood for 145 pea accessions utilizing the whole plastome sequences (Fig. 5a). The 145 pea accessions were grouped into seven clades with high confidence. These groups were named the 'PF group', 'PSeI-a group', 'PSeI-b group', 'PA group', 'PSeII group', 'PSeIII group', and the 'PS group'. The naming convention for these groups relates to the majority species names for accessions in each group, where P. fulvum makes up the 'PF group', P. sativum subsp. elatius in the 'PSeI-a group', 'PSeI-b group', 'PSeII group', and 'PSeIII group', P. abyssinicum in the 'PA group', and P. sativum in the 'PS group'. From this phylogenetic tree, it was observed that the 'PSeI-a group' and the 'PSeI-b group' had a close phylogenetic relationship and nearly all accessions in these two groups (except DCG0709 accession was P. sativum) were identified as P. sativum subsp. elatius. In addition to the P. sativum subsp. elatius found in PSeI, seven accessions from the PS group were identified as P. sativum subsp. elatius.

    The PCA results (Fig. 5b) also confirmed that domesticated varieties P. abyssinicum were closer to cultivated varieties PSeI and PSeII, while PSeIII was more closely clustered with cultivated varieties of P. sativum. A previous study has indicated that P. sativum subsp. sativum and P. abyssinicum were independently domesticated from different P. sativum subsp. elatius populations[34].

    The complete plastome sequences were utilized for haplotype analysis using TCS and median-joining network methods (Fig. 5c). A total of 76 haplotypes were identified in the analysis. The TCS network resolved a similar pattern as the other analyses in that six genetic clusters were resolved with genetic clusters PS and PSeIII being very closely related. The genetic cluster containing P. fulvum exhibits greater genetic distance from other genetic clusters. The genetic clusters containing P. abyssinicum (PA) and P. sativum (PS) had lower levels of intracluster differentiation. In the TCS network, Hap30 and Hap31 formed distinct clusters from other haplotypes, such as Hap27, which may account for the genetic difference between the 'PSeI-a group' and 'PSeI-b group'. The network analysis results were consistent with the findings of the phylogenetic tree and principal component analyses results in this study.

    Figure 5.  (a) An ML tree resolved from 145 pea plastomes. (b) PCA analysis showing the first two components. (c) Haplotype network of pea plastomes. The size of each circle is proportional to the number of accessions with the same haplotype. (d) Genetic diversity and differentiation of six clades of peas. Pairwise FST between the corresponding genetic clusters is represented by the numbers above the lines joining two bubbles.

    Among the six genetic clusters, the highest haplotype diversity (Hd) was observed in PSeIII (Hd = 0.99, π = 0.22 × 10−3), followed by PSeII (Hd = 0.96, π = 0.43 × 10−3), PSeI (Hd = 0.96, π = 0.94 × 10−3), PF (Hd = 0.94, π = 0.6 × 10−4), PS (Hd = 0.88, π = 0.3 × 10−4), and PA (Hd = 0.70, π = 0.2 × 10−4). Genetic differentiation was evaluated between each genetic cluster by calculating FST values. As shown in Fig. 5d, except for the relatively lower population differentiation between PS and PSeIII (FST = 0.54), and between PSeI and PSeII (FST = 0.59), the FST values between the remaining clades ranged from 0.7 to 0.9. The highest population differentiation was observed between PF and PA (FST = 0.98). The FST values between PSeI and different genetic clusters were relatively low, including PSeI and PF (FST = 0.80), PSeI and PS (FST = 0.77), PSeI and PSeIII (FST = 0.72), PSeI and PSeII (FST = 0.59), and PSeI and PA (FST = 0.72).

    To further determine the nucleotide variations in the pea pan-plastome, 145 plastomes were aligned and nucleotide differences analyzed across the dataset. A total of 1,579 variations were identified from the dataset (Table 1), including 965 SNVs, 24 Block Substitutions, 426 InDels, and 160 mixed variations of these three types. Among the SNVs, transitions were more frequent than transversions, with 710 transitions and 247 transversions. In transitions, T to G and A to C had 148 and 139 occurrences, respectively, while in transversions, G to A and C to T had 91 and 77 occurrences, respectively.

    Table 1.  Nucleotide variation in the pan-plastome of peas.
    Variant Total SNV Substitution InDel Mix
    (InDel, SNV)
    Mix
    (InDel, SUB)
    Total 1,576 965 24 426 156 4
    CDS 734 445 6 176 103 4
    Intron 147 110 8 29 0 0
    tRNA 20 15 1 4 0 0
    rRNA 11 3 0 6 2 0
    IGS 663 392 9 211 51 0
     | Show Table
    DownLoad: CSV

    When analyzing variants by their position to a gene (Fig. 6), there were 731 variations in CDSs, accounting for 46.3% of the total variations, including 443 SNVs (60.6%), six block substitutions (0.83%), 175 InDels (23.94%), and four mixed variations (14.64%). There were 104 variants in introns, accounting for 6.59% of the total variations, including 78 SNVs (75%), seven block substitutions (6.73%), and 19 InDels (18.27%). IGS (Intergenic spacers) contained 660 variations, accounting for 41.8% of the total variations, including 394 SNVs (59.7%), nine block substitutions (1.36%), 207 InDels (31.36%), and 50 mixed variations (7.58%). The tRNA regions contained 63 variants, accounting for 3.99% of the total variations, including 47 SNVs (74.6%) and 14 InDels (22.2%). The highest number of variants were detected in the IGS regions, while the lowest were found in introns. Among CDSs, accD (183) had the highest number of variations. In introns, rpL16 (18) and ndhA (16) had the most variants. In the IGS regions, ndhD-trnI-CAU (73), and trnL-UAA-trnT-UGU (44) possessed the greatest number of variants.

    Figure 6.  Variant locations within the pea pan-plastome categorized by genic position (Introns, CDS, and IGS).

    Finally, examples of some genes with typical variants were provided to better illustrate the sequence differences between clades (Fig. 7). For example, the present analysis revealed that the ycf1 gene exhibited a high number of variant loci, which included unique single nucleotide variants (SNVs) specific to the P. abyssinicum clade. Additionally, a unique InDel variant belonging to P. abyssinicum was identified. Similar unique SNVs and InDels were also found in other genes, such as matK and rpoC2, distinguishing the P. fulvum clade from others. These unique SNVs and InDels could serve as DNA barcodes to distinguish different maternal lineages of peas.

    Figure 7.  Examples of variant sites.

    The present research combined 145 pea plastomes to construct a pan-plastome of peas. Compared to single plastomic studies, pan-plastome analyses across a species or genus provide a higher-resolution understanding of phylogenetic relationships and domestication history. Most plastomes in plants possess a quadripartite circular structure with two inverted repeat (IR) regions and two single copy regions (LSC and SSC)[2024]. However, the complete loss of one of the IR regions in the pea plastome was observed which is well-known among the inverted repeat-lacking clade (IRLC) species in Fabaceae. The loss of IRs has been documented in detail from other genera such as Erodium (Geraniaceae family)[26,27] and Medicago (Fabaceae family)[28,29]. This phenomenon although not commonly observed, constitutes a significant event in the evolutionary trajectories of certain plant lineages[26]. Such large-scale changes in plastome architecture are likely driven in part by a combination of selective pressures and genetic drift[48]. In the pea pan-plastome, it was also found that, compared to some plants with IR regions, the length of the plastomes was much shorter, and the overall GC content was lower. This phenomenon was due to the loss of one IR with high GC content.

    Repetitive sequences are an important part of the evolution of plastomes and can be used to reconstruct genealogical relationships. Mononucleotide SSRs are consistently abundant in plastomes, with many studies identifying them as the most common type of SSR[4952]. Among these, while C/G-type SSRs may dominate in certain species[53,54], A/T types are more frequently observed in land plants. The present research was consistent with these previous conclusions, showing an A/T proportion exceeding 90% (Fig. 4). Due to their high rates of mutation, SSRs are widely used to study phylogenetic relationships and genetic variation[55,56]. Additionally, like other plants, pea plastome genes have a high frequency of A/Ts in the third codon position. This preference is related to the higher AT content common among most plant plastomes and Fabaceae plastomes in particular with their single IRs[57,58]. The AT-rich regions are often associated with easier unwinding of DNA during transcription and potentially more efficient and accurate translation processes[59]. The preference for A/T in third codon positions may also be influenced by tRNA availability, as the abundance of specific tRNAs that recognize these codons can enhance the efficiency of protein synthesis[60,61]. However, not all organisms exhibit this preference for A/T-ending codons. For instance, many bacteria have GC-rich genomes and thus show a preference for G/C-ending codons[6264]. This variation in codon usage bias reflects the differences in genomic composition and the evolutionary pressures unique to different lineages.

    This study also comprehensively examined the variant loci of the pea pan-plastome. Among these variant sites, some could potentially serve as DNA barcode sites for specific lineages of peas, such as ycf1, rpoC2, and matK. Both ycf1 and matK have been widely used as DNA barcodes in many species[6568], as they are hypervariable. Researchers now have a much deeper understanding of the crucial role plastomes have played in plant evolution[6971]. By generating a comprehensive map of variant sites, future researchers can now more effectively trace differences in plastotypes to physiological and metabolic traits for use in breeding elite cultivars.

    The development of a pan-plastome for peas provides new insights into the maternal domestication history of this important food crop. Based on the phylogenetic analysis in this study, we observed a clear differentiation between wild and cultivated peas, with P. fulvum being the earliest diverging lineage, and was consistent with former research[34]. The ML tree (Fig. 5a) indicated that cultivated peas had undergone at least two independent domestications, namely from the PA and PS groups, which is consistent with former research[34]. However, as the present study added several accessions over the previous study and plastomic data was utilized, several differences were also found[34], such as the resolution of the two groups, referred to as PSeI-a group and PSeI-b group which branched between the PA group and PF group. Previous research based on nuclear data[34] only and with fewer accessions showed that the PA group and PF group were closely related in phylogeny, with no PSeI group appearing between them. One possible explanation is that the PSeI-a and PSeI-b lineages represents the capture and retention of a plastome from a now-extinct lineage while backcrossing to modern cultivars has obscured this signal in the nuclear genomic datasets. However, procedural explanations such as incorrectly identified accessions might have also resulted in such patterns. In either case, the presence of these plastomes in the cultivated pea gene pool should be explored for possible associations with traits such as disease resistance and hybrid incompatibility. This finding underscores the complexity of the domestication process and highlights the role of hybridization and selection in shaping the genetic landscape of cultivated peas. As such, future studies integrating data from the nuclear genome, mitogenome, and plastome will undoubtedly provide deeper insights into the phylogeny and domestication of peas. This pan-plastome research, encompassing a variety of cultivated taxa, will also support the development of elite varieties in the future.

    This study newly assembled 103 complete pea plastomes. These plastomes were combined with 42 published pea plastomes to construct the first pan-plastome of peas. The length of pea plastomes ranged from 120,826 to 122,547 bp, with the GC content varying from 34.74% to 34.87%. The codon usage pattern in the pea pan-plastome displayed a strong bias for A/T in the third codon position. Besides, the codon usage of petB, psbA, rpl16, rps14, and rps18 were shown extremely influenced by natural selection. Three types of SSRs were detected in the pea pan-plastome, including A/T, AT/TA, and AAT/ATT. From phylogenetic analysis, seven well-supported clades were resolved from the pea pan-plastome. The genes ycf1, rpoC2, and matK were found to be suitable for DNA barcoding due to their hypervariability. The pea pan-plastome provides a valuable supportive resource in future breeding and selection research considering the central role chloroplasts play in plant metabolism as well as the association of plastotype to important agronomic traits such as disease resistance and interspecific compatibility.

  • The authors confirm contribution to the paper as follows: study conception and design: Wang J; data collection: Kan J; analysis and interpretation of results: Kan J, Wang J; draft manuscript preparation: Kan J, Wang J, Nie L; project organization and supervision: Tiwari R, Wang M, Tembrock L. All authors reviewed the results and approved the final version of the manuscript.

  • The annotation files of newly assembled pea plastomes were uploaded to the Figshare website (https://figshare.com/, doi: 10.6084/m9.figshare.26390824).

  • This study was funded by the Guangdong Pearl River Talent Program (Grant No. 2021QN02N792) and the Shenzhen Fundamental Research Program (Grant No. JCYJ20220818103212025). This work was also funded by the Science Technology and Innovation Commission of Shenzhen Municipality (Grant No. RCYX20200714114538196) and the Innovation Program of Chinese Academy of Agricultural Sciences. We are also particularly grateful for the services of the High-Performance Computing Cluster in the Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences.

  • The authors declare that they have no conflict of interest.

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  • Cite this article

    Arrieta-González A, Silva-Martínez KL, Vite-Cristóbal C, Rodríguez-Andrade A, Hernández-Beltrán A, et al. 2024. Agronomic traits of seven accessions of Cenchrus purpureus under rainfed conditions in the tropical region of Veracruz, México. Grass Research 4: e023 doi: 10.48130/grares-0024-0022
    Arrieta-González A, Silva-Martínez KL, Vite-Cristóbal C, Rodríguez-Andrade A, Hernández-Beltrán A, et al. 2024. Agronomic traits of seven accessions of Cenchrus purpureus under rainfed conditions in the tropical region of Veracruz, México. Grass Research 4: e023 doi: 10.48130/grares-0024-0022

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Agronomic traits of seven accessions of Cenchrus purpureus under rainfed conditions in the tropical region of Veracruz, México

Grass Research  4 Article number: e023  (2024)  |  Cite this article

Abstract: The purpose of this study was to determine the agronomic characteristics and yield of seven Cenchrus purpureus accessions (Taiwan grass, King grass, Elephant grass, Merkeron, CT-115, Purple grass, and Maralfalfa) to identify the best options to use as fodder resources in the Huasteca Alta Veracruzana (HAV) ruminant production units. The research was conducted at the Instituto Tecnologico Superior de Tantoyuca in 2019 and 2020, under rainfed conditions. Sowing density was established at 36 tillers per 25 m2, with a spacing between rows of 0.8 m and 0.8 m between plants. Fresh weight, dry matter, daily rates of dry matter accumulation in leaves, leaf/stem ratio, height, and harvest frequency were assessed. Rainfall amount, temperature, relative humidity, and global radiation levels were recorded to assess their effect on the evaluated variables. The one-way analysis of variance and multivariate analysis techniques were used, such as multiple linear regression and clustering analysis with Statistica V10 software. There were no statistical differences between the fresh weight of different accessions in the rainy season. On the other hand, CT-115 presented a higher dry matter content than Merkeron or Elephant grass (p < 0.05). The correlation analysis showed a high association between dry matter and daily rates of dry matter accumulation in leaves. The results varied due to weather phenomena and C. purpureus genetic variability. Quality parameters must be evaluated to identify the accessions with the best nutritional values and their effect on animal performance.

    • Cenchrus is a highly diversified genus[1], with around 145 extant species[2]. At least for the Elephant, Taiwan, and Mott varieties, its production potential has been proven under adequate irrigation and fertilization conditions[3]. It is a species native to Africa, and it has been introduced to tropical and subtropical countries, where it has been used as a fodder crop due to its high biomass, nutritional content, and adaptability to diverse climates and soil types[4]. However, weather conditions in the tropics entail well-defined rain and drought periods, which affect crop productivity[5].

      Cenchrus purpureus (Schumach.) Morrone, exhibits extensive genetic diversity, which contributes to its adaptability to various environmental conditions. This diversity, stemming from natural variation and selective breeding, has led to cultivars suited to different climates and soils[4]. The species is highly adaptable, thriving in areas with varying rainfall levels[5], and poor soil conditions[4,6]. Its deep root system enhances drought resilience, making it a critical species for fodder production, bioenergy production, and soil conservation in sustainable agriculture, where it helps reduce erosion and improve soil structure[4].

      C. purpureus provides a range of economic advantages for local farmers and livestock, such as enhanced feed quality, reduced costs, and the possibility of sustainable agricultural practices. For example, previous studies[79] showed the current yield, crude protein, metabolizable energy, neutral and acid detergent fiber of C. purpureus grass to be 26.0−30.0 t/ha/year, 6.5%−9.6%, 1.89−2.06 Mcal/kg, 64.1%−67.3%, and 38.8%−43.1%, respectively, suggesting an opportunity for significant improvement of both the yield and nutritive value of this grass. Likewise, other authors[10,11] highlight the potential of various techniques to enhance the quality of C. purpureus grass and these improvements could lead to increased economic profitability and sustainability in livestock farming within tropical regions.

      The use of C. purpureus accessions, such as King grass, Maralfalfa, Elephant grass, Merkeron, Purple grass, CT-115, and Taiwan, is widespread in tropical regions of Mexico. King grass is favored for its height and regrowth under intensive management[12,13]. Maralfalfa is valued for its fast growth and high digestibility, making it ideal for meat and milk production, Elephant grass is famous for its resilience and versatility[13]. Merkeron is preferred in drought-prone areas, and Purple grass is used for high yields and pest resistance[13], while CT-115[12,13], and Taiwan[1214] are favored for their nutritional value and productivity in intensive systems.

      This fodder crop is a multifunctional species which not only supports agricultural productivity but also plays a crucial role in environmental sustainability through its contributions to soil conservation, carbon sequestration, and the provision of ecosystem services[11]. Soil pH, base exchange capacity, and cation exchange capacity, along with phosphorus, potassium and magnesium levels, decrease after ten years of continuous grazing despite a slight increase in organic matter, suggesting increased acidity and a reduction in essential nutrients[11]. On the other hand, the use of robust methodologies, such as variance analysis and regressions in growth analysis, allows for the identification of factors that maximize biomass yield and improve the sustainability of C. purpureus cultivation under different environmental conditions[15].

      Fodder production and quality must be carefully evaluated, and proper management decisions should be based on this evaluation to improve productivity in cattle farming units, and to adapt to the conditions created by climate change[16]. The modified environmental conditions (climate variability) have not been thoroughly investigated, nor has their global impact been evaluated[17]; in the case of HAV, the months are classified as abnormally dry have increased to 10 from 2016 to 2021, and the region suffered from extreme drought in some years within this period[18]. It was hypothesized that some of these genotypes might be capable of producing higher yields despite adverse environmental conditions. Thus, fresh weight, dry matter, and agronomic traits of seven accessions of Cenchrus purpureus (Taiwan grass, King grass, Elephant grass, Merkeron, CT-115, Purple grass, and Maralfalfa) were evaluated under the current climate conditions of the HAV region.

    • The research was carried out at the experimental field of the Instituto Tecnológico Superior de Tantoyuca, in the municipality of Tantoyuca, state of Veracruz, Mexico, located in the HAV region, between parallels 97°59' W and 98°24' W, and 21°06' N and 21°40' N, at an altitude of up to 300 masl. This region has a warm subhumid climate, with rainy summers, a mean annual temperature between 22 and 26 °C, an average annual rainfall between 1,100 and 1,300 mm, and a relative humidity of 44%[19]. According to FAO classification, the soil where the experiment was performed is classified as a pellic vertisol with clayey texture, a pH of 7.8, light salinity, 18.3 ppm N-NO3, 50 ppm phosphorus, 49 ppm potassium, and organic matter (> 5.1%), according to the analysis performed at the Soil Laboratory of the Veracruz University.

    • The vegetal material used for this study belongs to the Cenchrus purpureus (Schumach.) Morrone species, and the evaluated accessions, taken as treatments, were King grass, Maralfalfa, Elephant grass, Merkeron, Purple grass, CT-115, and Taiwan, obtained from the 'La Posta' experimental field, belonging to the National Institute of Forestry, Agricultural and Livestock Research (INIFAP), in the town of Paso del Toro, Veracruz state, Mexico. A randomized block experimental design was used, with seven treatments and four replications. The assessment period ran from July 2019 to April 2020 under rainfed conditions.

    • Twenty eight plots of 25 m2 (5 m × 5 m) were created in a 1,222 m2 area, distributed in four blocks (seven plots p/block), with a distance of 2 m between plots and blocks. Planting of the assessed accessions was done with two stems (phytomers with three internodes) per planting point, introducing two internodes in the seedbed, and placing the stems at a 45° angle. The distance between crop rows and sowing points was 80 cm, resulting in a plant density of 36 tillers per 25 m2 in every experimental unit. The seeded ground was only prepared by primary tillage (plowing and harrowing). Planting was done in September 2018, and the uniform cutting was made in July 2019, at 15 cm above the ground.

    • A sample area of 2 m2 (1 m × 2 m) was marked, leaving a 2 m border in each experimental unit to avoid the edge effect. Harvest frequency was determined based on a mean intercepted radiation rate of ≥ 95 in the four replications of each treatment. Four consecutive cuts were performed[20].

    • Cuts were done at 15 cm above the ground for FW assessment purposes, and all the biomass of the representative sample (2 m2) was weighed immediately after cutting, using a digital scale with a minimum precision of 1 g. Five whole plants (leaf and stem) were randomly selected to determine the DM and obtain a 300 g subsample, which was dried in a forced air lab oven at 65 °C to a constant weight[21]. The results were extrapolated to 10,000 m2 (ha).

    • Five plants were selected from the biomass obtained from the sample, and the leaves were separated from the stem. Once separated, the stems were all placed in a forced air lab oven at 65 °C to a constant weight. The LSR was estimated by dividing the dry weight of the leaf samples by the dry weight of the stem samples. The ADLMR was calculated by dividing the dry leaf matter yield by the number of days between cutting periods. To estimate the FW, DM, LSR, and ADLMR variables per season (dry and rainy), the values of each variable per accession and season were added up. The annual values of all variables were obtained by adding up the data from the four cuts[22].

    • The H was determined using a measuring tape, calibrated in meters, centimeters, and millimeters, to measure five plants of each sample at every cutting period, from the soil level to the flag leaf.

    • Some climate variables that are important for biomass production, such as average rainfall (mm), relative humidity (%), global radiation (W/m2), mean temperature (°C), and reference evapotranspiration (mm), were taken during the development of the research activities (Fig. 1). These data were obtained from the weather station located at the experimental field of the Instituto Tecnológico Superior de Tantoyuca. For the purposes of this research, 'dry season' is defined as the months of the year in which reference evapotranspiration is greater than the average rainfall because, in these conditions, crops are in a state of stress due to a lack of moisture, and this period is considered key in determining the need for irrigation[23].

      Figure 1. 

      Climogram of the study area. Data were obtained from July 2019 to June 2020.

    • The Statistic software (STATISTICA V10, 2013) was used for statistical analysis; the general linear model (GLM) was as follows:

      Yijk=μ+αi+βj+εijk

      Where: Yijk = the quantitative response variable of the i-th accession and the j-th replication. μ = Overall mean. αi = fixed effect of the i-th Cenchrus purpureus accession. βj = effect of the j-th block. εijk = random error associated with each observation, where ij~NI(0,σ2), normality was analyzed with the Shapiro-Wilk test; and homoscedasticity, with Bartlett's test (p < 0.05). The means were compared with the Fisher method (p < 0.05).

    • Using the studied response variables from each cutting performed, and the monthly average climatological variables of the research site, a multiple linear analysis was executed to ascertain the weight climatological variables have on the assessed accessions. The MLR model is as follows:

      γι=β0+β1X1+β2X2+β3X3+β4X4+ei

      Where: γι = Dependent variable of the i-th accession; β0 = Intercept; X1 = Accumulated precipitation; X2 = Relative humidity; X3 = Global radiation; X4 = Average temperature; ei = Random component.

      Lastly, Principal Component Analyses (PCA) were used to observe the possible grouping of the agronomic and yield variables, as well as the accession grouping (STATISTICA V10, 2013).

    • Merkeron grass had the highest value for ADLMR, statistically different (p < 0.05) from Taiwan and King grass accessions, thus demonstrating its capability to accumulate dry matter in its leaves (Table 1). Consequently, this accession had an LSR of 0.88, the greatest of all the accessions, showing a statistical difference (p < 0.05) with the CT-115 accession, which had the lowest value (0.58). CT-115 showed the highest capacity for dry matter accumulation on its stems, which is made more evident by its being one of the tallest accessions, only shorter than King grass and Maralfalfa. An important characteristic, from the perspective of productivity, is harvest frequency (HF), that is, the time (d) it takes for the plant to reach maturity and harvest time. Merkeron, Elephant, and Purple grasses were harvested at intervals ~60 d, while the rest of the accessions at ~80 d (p < 0.05) (Table 1).

      Table 1.  Agronomic variables of seven Cenchrus purpureus accessions in the HAV in the rainy season.

      Accession Variable
      ADLMR (kg/ha/d) LSR H (m) HF (d)
      Elephant 202.44ab 0.83a 1.85b 63.00b
      Merkeron 220.02a 0.88a 2.06ab 62.50b
      Purple 200.72ab 0.85a 1.90b 62.50b
      Taiwan 161.95b 0.82a 2.28a 83.00a
      King grass 154.07b 0.78a 2.16ab 83.00a
      CT-115 189.82ab 0.58b 2.05ab 83.00a
      Maralfalfa 170.04ab 0.70ab 2.15ab 83.00a
      s.e. 20.35 0.06 0.13 4.13
      ADLMR: Accumulated dry leaf matter rate. LSR: Leaf:stem ratio. H: Height. HF: Harvest frequency. Means within columns followed by different letters differ by Fisher test at 5% probability.

      Elephant grass had the highest ADLMR, showing a statistical difference (p < 0.05) with Merker grass, Taiwan A-144, King grass and CT-115. In the present study, the highest LSR was observed in Purple grass (p < 0.05). However, despite this, Purple grass had the lowest H, which was notably different from that of Elephant grass and Taiwan. There was a slight variation in HF, with Elephant grass having the lowest value, similar to King grass, and CT-115 (p > 0.05). Merkeron grass had the highest HF of all accessions (p < 0.05) (Table 2).

      Table 2.  Agronomic variables of seven Cenchrus purpureus accessions in the HAV on the dry season.

      Accession Variables
      ADLMR(kg/ha/d) LSR H (m) HF (d)
      Elephant grass 228.51a 0.93b 1.94a 79.00e
      Merkeron grass 108.84bc 0.91b 1.79ab 104.50a
      Purple grass 198.68a 1.22a 1.70b 98.00ab
      Taiwan 79.52c 0.92b 1.92a 94.00cb
      King grass 110.97bc 0.89b 1.84ab 85.50cde
      CT-115 91.02c 0.86b 1.72b 84.00de
      Maralfalfa 187.45ab 0.93b 1.86ab 92.50bcd
      s.e. 30.56 0.06 0.06 3.34
      ADLMR: Accumulated dry leaf matter rate. LSR: Leaf:stem ratio. H: Height. HF: Harvest frequency. Means within columns followed by different letters differ by Fisher test at 5% probability.

      The ADLMR variable in Elephant grass, which had a value of 228.51 kg/ha/d, was the highest in all treatments, showing statistical differences (p < 0.05) with Merkeron grass, Taiwan, King grass, and CT-115, and a greater capability to deposit dry matter on the leaves (Table 3). Even though Elephant grass showed an adequate LRS, it was surpassed by Purple grass, which was statistically different (p < 0.05) from King grass, CT-115, and Maralfalfa. Measure H was not statistically different (p > 0.05) among the assessed accessions. The shortest HF was 71 d, and it corresponded to Elephant grass, while the longest corresponded to the Taiwan accession, with statistical differences between the two (p < 0.05).

      Table 3.  Annual analysis of agronomic variables in seven Cenchrus purpureus accessions in the HAV region.

      Accession Variables
      ADLMR (kg/ha/d) LSR H (m) HF (d)
      Elephant grass 215.47a 0.88ab 1.89a 71.0b
      Merkeron grass 164.42ab 0.89ab 1.92a 83.5ab
      Purple grass 199.70ab 1.03a 1.80a 80.2ab
      Taiwan 120.73b 0.87ab 2.09a 88.5a
      King grass 132.51b 0.83b 2.00a 84.2ab
      CT-115 140.42ab 0.72b 1.88a 83.5ab
      Maralfalfa 178.74ab 0.81b 2.00a 83.5ab
      Standard error 19.08 0.04 0.07 3.2
      Season
      Rainy 185.58a 0.78b 2.06a 74.2b
      Dry 143.56b 0.95a 1.82b 91.0a
      s.e. 10.20 0.02 0.37 1.7
      ADLMR: Accumulated dry leaf matter rate. LSR: Leaf:stem ratio. H: Height. HF: Harvest frequency. Means within columns followed by different letters differ by Fisher test at 5% probability.

      The differences in climatic factors between the dry and rainy seasons (Fig. 2) influenced the agronomic behavior of the assessed accessions. Noteworthy values of ADLMR, H, and HF were reported during the rainy season. On the other hand, LSR was greatest in the dry season (p < 0.05).

      Figure 2. 

      Grouping of Cenchrus purpureus accessions according to two main components: Factor 1. Agronomic characteristics and Factor 2. Yield parameters. (a), (c) dry season, (b), (d) rainy season.

      The FW of the assessed accessions was not statistically different during the rainy season; nevertheless, the DM results indicate that CT-115 was quantitatively superior to all the other accessions, and statistically different (p < 0.05) from Elephant and Merkeron grass. Conversely, the FW of Maralfalfa was greatest in the dry season, and it was statistically different from CT-115 and Taiwan (p < 0.05). In turn, Elephant grass had the highest accumulation of dry matter (t/ha), followed by Purple grass and Maralfalfa (p < 0.05) in the same period. The annual cumulative fresh weight was greatest in Maralfalfa, and statistically different (p < 0.05) from Taiwan, while Elephant grass had the greatest amount of accumulated dry matter of all the accessions after a year of assessment (Table 4).

      Table 4.  Cumulative yields of fresh weight and dry matter per season and cumulative annual yield of seven accessions of Cenchrus purpureus in the HAV region.

      Accession Rainy season Dry season Annual
      FW (t/ha) DM (t/ha) FW (t/ha) DM (t/ha) FW (t/ha) DM (t/ha) DM (%)
      Elephant grass 261.31a 54.39a 155.18abc 80.09b 416.50ab 134.49a 34.1a
      Merkeron grass 269.78a 55.60a 179.11a 46.71a 448.89ab 102.31ab 24.2b
      Purple grass 264.66a 61.65ab 153.46ab 69.30b 418.13ab 130.95a 32.7a
      Taiwan 252.66a 60.05ab 104.96c 29.21a 357.62a 89.27b 27.5ab
      King grass 259.79a 61.32ab 156.66ab 41.11a 416.46ab 102.44ab 26.3ab
      CT-115 321.14a 79.81b 120.01bc 32.20a 441.16ab 112.01ab 27.2ab
      Maralfalfa 295.95a 67.03ab 190.57a 67.37b 486.52b 134.41a 30.0ab
      s.e. 25.08 7.22 13.77 6.05 32.62 11.23 2.84
      FW: Fresh weight. DM: Dry matter. Means within columns followed by different letters differ by Fisher test at 5% probability.

      Table 5 shows the average FW and DM per cutting period. The superior capability of Elephant grass to produce dry matter (DM) under the particular climatic conditions of the HAV is evident. Statistical differences exist in FW and DM variables between seasons (p < 0.05). The rainy season yielded the highest values for these variables.

      Table 5.  Average annual yields per cut of fresh weight and dry matter of seven Cenchrus purpureus accessions in the HAV region.

      Accession Variable
      FW (t/ha) DM (t/ha)
      Elephant grass 208.25ab 67.24a
      Merkeron grass 224.44a 51.15ab
      Purple grass 209.06ab 65.47a
      Taiwan 178.81b 44.63b
      King grass 208.23ab 51.22ab
      CT-115 220.58ab 56.00ab
      Maralfalfa 243.26a 67.20a
      s.e. 15.01 6.19
      Season
      Rainy 275.04a 62.84a
      Dry 151.42b 52.28b
      s.e. 8.02 3.31
      FW: Fresh weight. DM: Dry matter. Means within columns followed by different letters differ by Fisher test at 5% probability.

      The correlation analysis used to determine the degree of association between the DM and other agronomic variables indicated positive correlations with H, ADLMR, and a negative correlation with LSR. Nevertheless, it was found that there is little association with the FW variable (r = 0.147), showing a value of p= 0.083. For the case of the H and LSR variables, the associations were low (r = 0.192 and r = 0.262, respectively). There was a high degree of association with the ADLMR variable (r = 0.889), with a value of p = 0.001 (Table 6).

      Table 6.  Correlation analysis between the DM and the agronomic variables of seven Cenchrus purpureus accessions grown in the HAV.

      Variable r r2 α s.e. (a) p (a) β s.e. (b) p (b)
      DM
      H 0.192 0.037 12.826 6.743 0.059 8.218 3.580 0.023
      LSR 0.262 0.069 44.658 5.333 0.001 -19.545 6.116 0.002
      DLMAR 0.884 0.782 3.967 1.227 0.002 0.153 0.007 0.001
      FW 0.147 0.022 26.466 1.525 0.001 0.000 0.001 0.083
      ADLMR: Accumulated dry leaf matter rate. LSR: Leaf:stem ratio. H: Height. FW: Fresh weight. r2: Determination coefficient. a: intercept. b: slope. p: p-value.

      MLR was implemented for the creation of statistical models to describe the magnitude of the association between climatological and agronomic variables of Cenchrus purpureus in the HAV is presented in Table 7. From all the performed analysis, the one that obtained a medium to high value in the goodness-of-fit indicators (r = 0.73 and r2adjusted = 0.52) was the FW variable, where the Forward method included all the climatic variables. The goodness-of-fit indicators for the DM mathematical model (r = 0.22 and r2adjusted = 0.03) do not indicate a good fit of the data, and likewise with the LSR and ADLMR. The MLR model (Forward method) for the H variable showed a medium-high degree of association (r = 0.70 and r2adjusted = 0.48), only including temperature and global radiation.

      Table 7.  Multiple linear regression models of the agronomic variables of seven Cenchrus purpureus accessions, associated with climatological variables of the HAV.

      Variable Y = α + β1 + β2 + β3 + β4 + c r r2adjusted p MSE Method
      FW −27.2 0.10 −33.01 2.12 3.15 34.68 0.73 0.52 0.01 1202.92 F
      p value 0.84 0.10 0.01 0.01 0.01
      DM 11.08 −1.50 0.15 14.33 0.22 0.03 0.02 205.45 F
      p value 0.50 0.29 0.06
      H 3.64 0.00 −0.28 0.01 0.24 0.70 0.48 0.01 0.06 F
      p value 0.01 0.17 0.01 0.01
      LSR 2.90 −0.01 −0.01 0.16 0.53 0.28 0.01 0.02 B
      p value 0.01 0.01 0.01
      ADLMR 80.19 −16.99 1.45 80.36 0.32 0.08 0.01 6458.51 F
      p value 0.39 0.036 0.01
      Y model = α + β1X1 + β2X2 + β3X3 + β4X4 + c; α: Intercept; β1−4: Slope factor; X1: Accumulated precipitation (mm). X2: Average temperature (°C). X3: Global radiation (W/m2). X4: Relative humidity (%). c: Estimate error. FW: Fresh weight. DM: Dry matter. r2adjusted: Adjusted correlation coefficient. p: Probability value. MSE: Mean Square Error. F: forward method. B: backward method. (−): Variable not included in the model.

      The principal component analysis (PCA) was conducted using all estimated variables (rainy and dry seasons) of the seven Cenchrus purpureus accessions, resulting in the creation of two groups of orthogonally independent variables. The first group (Factor 1) corresponds to those known as agronomic characteristics, and the second group (Factor 2) is made up of estimated yield variables (Fig. 2).

      The PCA implemented in the dry and rainy seasons (Fig. 2) formed three groups of Cenchrus purpureus accessions: a) outstanding agronomic characteristics and fresh weight and dry matter, b) outstanding yield characteristics, and c) unremarkable agronomic and yield characteristics. The Cenchrus purpureus accessions integrating each group were different in both seasons. Their genetic characteristics and interactions with the environment define their performance.

    • The ADLMR of the Taiwan accession was greater than reported by Rueda et al.[24] in the south region of Veracruz state during the rainy season. Despite the application of fertilizers, the values that they obtained were lower than those reported in this study. The planting density was not the same, thus the greater accumulation of DM/ha/d may be attributed to the longer HF, and to a greater acidity of the soil where the experiment was carried out, which negatively affected the yield. The ADLMR statistics were led by Elephant grass, Purple grass and Maralfalfa (Table 3) these results were higher than those reported by Uvidia-Cabadina et al.[25], who reported that Maralfalfa had an average growth rate of 113 ka/ha/d at 75 days of age.

      The LSR results of the evaluated accessions showed greater values during the dry season, in comparison with the rainy season. Purple grass stood out from the rest in this variable, showing a value of 1.03 (with a harvest frequency of 80 d). This does not coincide with the results reported by Rueda et al.[24], who evaluated this parameter at 185 days of regrowth; however, they found that LSR values decreased in the cultivars exposed to irrigation with nitrogen fertilization, showing that the stem proportions in this grass increased with age. The LSR decreased due to the increase in stem proportions, mainly in the rainy season, which favors apical growth. This was also described by Habte et al.[22] upon evaluating 45 genotypes of Cenchrus purpureus in the dry and rainy seasons of Bishoftu, Ethiopia, at 1,890 masl. However, it has been shown[26] that planting density plays an important role on the LSR of Pennisetum purpureus cultivars, in which values of 1.4 were obtained with 40,000 plants/ha. For this research, plant density per hectare in the research units was established at 15,625, which could partially explain the lower values found in the assessed accessions. Increased stem proportions in this genus reduces the quality of the fodder in terms of their neutral detergent fiber content, as indicated by Maldonado-Mendez et al.[27].

      In the case of King grass harvested at 80 d, the LSR was 0.78 and 0.89 in the rainy and dry season, respectively (Tables 1 & 2). The results seem to be related to an increased availability of water, which differs from the reports of Rueda et al.[24], who observed an LSR value of 0.26 in the King grass accession after 185 d of regrowth, with the use of fertilizer at various doses and concentrations. However, when harvested after 60 d in that study, the value of this parameter oscillated between 0.66 and 0.70, which led to the conclusion that there is a negative correlation between the LSR and yield, contrasting with the results of this study.

      In the present study, King grass was one of the accessions with the highest H value per harvest frequency (2.00 m). This result differs from the reports by Rueda et al.[24], who, upon application of fertilizers at several concentrations (a formula 200, 100, 100 kg/ha/year, N-P-K), managed to increase this agronomic characteristic. The heights obtained from accessions that they assessed at 125 d were generally higher than those reported in this study, which suggests a favorable response to fertilizer. Upon evaluating eight varieties of Cenchrus purpureus, including CT-115, Ruiz et al.[28], reported that the height values did not surpass those in this research. The results are similar to the results of our study, where the height of the assessed accessions differs among them (p > 0.05). Plant height in different C. purpureus genotypes partially depend on regrowth days; thus, the older the plant is, the taller it is[29], which could explain the observed difference.

      Accessions with the greatest average FWs per cutting period were Maralfalfa and CT-115 (243 and 220 t/ha, respectively), at HF of 83 d. These FW results are higher than those presented by Maldonado-Mendez et al.[27], who assessed Maralfafa accession in a humid tropical region of Chiapas, Mexico. They established six cutting periods, ranging from 28 to 97 d, and coincided in that Maralfalfa is capable of accumulating fresh weight as days pass, but its nutritional value decreases over time. Arias et al.[29], reported that CT-115 assessed under irrigation conditions with organic fertilizer showed a fresh weight lower than those presented here when harvested at 150 d of regrowth. The region's low precipitation level could explain this variable's lower values. Measured yields were lower in the dry season, showing significance in them (p < 0.05). This same effect was reported by Habte et al.[22], who associated the high FW and DM with the months of highest rainfall. Moreover, they found no significant differences between the genotypes they assessed, unlike the results reported here (Table 5).

      DM is a desirable attribute in fodder crops because it contains nutrients that could be beneficial to ruminants. Results presented here showed that some accessions were more capable of depositing dry matter, and the variation in climatological variables between the rainy and dry seasons did not affect the behavior of this indicator to any considerable degree, such as for Elephant grass, Purple grass, and Maralfalfa (Table 4). However, the climatic conditions of the rainy and dry season affected DM values of the rest of the assessed accessions (p < 0.05) This indicates that these genotypes are susceptible to climate fluctuations, as demonstrated in an experiment by Uvidia-Cabadina et al.[25] in the Ecuadorian Amazon region. They evaluated the Maralfalfa accession at different ages and climatic conditions, and found a correlation between dry matter, rainfall, outdoor temperature, and relative humidity. Taiwan showed greater DM in the rainy season, which duplicated the amount shown in the dry season. Maldonado-Mendez et al.[27] evaluated the effect of age on the DM of the Maralfalfa cultivar during the rainy season in Chiapas, Mexico, and concluded that age helps to duplicate this variable; however, their yields do not surpass those reported in this study, possibly due to the shortened HF and the characteristics of the soil. The photosynthetic and DM accumulation capabilities show variation within the Cenchrus genus, the higher yields of some accessions during the seasons of most abundant rainfall is due to their intrinsic potential and the higher amount of nutrients dissolved in the ground because of the greater humidity, as illustrated by Habte et al.[22], upon evaluation of the DM and FW of several genotypes of this genus in similar conditions.

      Among the assessed accessions, DM per cut, per year, was greatest in Purple grass and Maralfalfa (Table 5). In this respect, it has been mentioned that these cultivars showed the highest DM when compared with King grass, CT-115, and Elephant grass, and highlighted that fertilization and longer HF were factors that increased the accumulation of DM[25,29,30] in all the assessed genotypes. This explains the greater DM found in this study.

      Most of the evaluated agronomic variables showed a low association degree, with DM and FW showing a positive degree, although still low and not significant (Table 6). Therefore, it is possible to infer that the amount of water accumulated in the stems differs among the assessed accessions, which occupies a greater proportion of the plant (Table 3). In contrast, Habte et al.[22] found high positive correlations (r = 0.86) between the total amounts of DM and FW accumulated in several Cenchrus purpureus cultivars. Seemingly, the higher proportion of leaves (LSR 2.41 and 5.87 in the rainy and dry seasons, respectively) boosted this correlation. Moreover, these authors coincide in finding a correlation between DM and LSR (negative correlation), indicating that the higher the LSR, the higher the total proportion of leaves in the plant and, consequently, the amount of DM represented by the stem is lower.

      The data that best fits the MLR model corresponds to FW variables, which is evidenced by their goodness indicators (Table 7); Araujo et al.[30] report similar values in these indicators for several species of C4 grass crops. Pannicum maximum (Tanzania and Mombasa), a grass species with an erect growth habit, like that of the Cenchrus genus, reached r2 values between 0.78 and 0.87 for the ADLMR and ambient temperature variables in the univariate linear regression analysis. The step-by-step execution with the Forward method used in this investigation for the multivariate regression model included all the used climatological variables. From these results, it can be observed that temperature has a negative angular value on biomass production. Andrade et al.[31] found that temperature was related to enzymatic physiological processes, such as photosynthesis, and other processes related to transport through cellular membranes. The production behavior of the assessed accessions may have been affected by the extreme climatological conditions under which this research was done (Fig. 1).

    • The assessed accessions showed variations in their agronomic behavior and yield indicators, attributed to changes in the climatic variables between the rainy and dry seasons, and to genetic variability. Elephant grass and Maralfalfa achieved the highest DM and FW in both seasons, even though there were minimal differences between them, proving their genetic capability to maintain a stable production in different environmental conditions. It is necessary to simultaneously evaluate the agronomic characteristics, yield, and quality indicators of the assessed accessions to identify those who show the best levels in these attributes.

      • The first author of the manuscript (Armando Arrieta-González) received a scholarship for Doctoral studies from the National Council of Humanities, Science and Technology (CONAHCyT). We thank the 'La Posta' experimental field belonging to the National Institute of Forestry, Agricultural and Livestock Research (INIFAP) for the accessions of Cenchrus purpureus.

      • The authors confirm contribution to the paper as follows: study conception and design: Arrieta-González A, Silva-Martínez KL, Domínguez-Mancera B; data collection: Arrieta-González A, Silva-Martínez KL, Vite-Cristóbal C; analysis and interpretation of results: Arrieta-González A, Silva-Martínez KL, Hernández-Beltrán A, Domínguez-Mancera B; draft manuscript preparation: Arrieta-González A, Silva-Martínez KL, Rodríguez-Andrade A, Domínguez-Mancera B. All authors reviewed the results and approved the final version of the manuscript.

      • The datasets generated during and/or analyzed during the current study are available from the corresponding author Belisario Domínguez-Mancera on reasonable request.

      • The authors declare that they have no conflict of interest.

      • Copyright: © 2024 by the author(s). Published by Maximum Academic Press, Fayetteville, GA. This article is an open access article distributed under Creative Commons Attribution License (CC BY 4.0), visit https://creativecommons.org/licenses/by/4.0/.
    Figure (2)  Table (7) References (31)
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    Arrieta-González A, Silva-Martínez KL, Vite-Cristóbal C, Rodríguez-Andrade A, Hernández-Beltrán A, et al. 2024. Agronomic traits of seven accessions of Cenchrus purpureus under rainfed conditions in the tropical region of Veracruz, México. Grass Research 4: e023 doi: 10.48130/grares-0024-0022
    Arrieta-González A, Silva-Martínez KL, Vite-Cristóbal C, Rodríguez-Andrade A, Hernández-Beltrán A, et al. 2024. Agronomic traits of seven accessions of Cenchrus purpureus under rainfed conditions in the tropical region of Veracruz, México. Grass Research 4: e023 doi: 10.48130/grares-0024-0022

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